Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0018.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    54   4e-08
AL110500-7|CAB54490.1|  489|Caenorhabditis elegans Hypothetical ...    29   1.2  
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z77659-6|CAB01167.1|  401|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z81485-11|CAJ21556.1|  449|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z81485-9|CAB03981.3|  498|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL022275-4|CAJ21562.1|  449|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL022275-2|CAA18361.3|  498|Caenorhabditis elegans Hypothetical ...    27   6.5  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 33/69 (47%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
 Frame = -3

Query: 241 FHYSGTCAMGSVVDSK-------MKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKIS 83
           +H S TC MGS  D         M VYG +NL+VVD S MP IV  N  A  IMMAE+ +
Sbjct: 519 YHPSCTCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAERAA 578

Query: 82  DDIKNEYSL 56
           D IK++  L
Sbjct: 579 DLIKHKKQL 587


>AL110500-7|CAB54490.1|  489|Caenorhabditis elegans Hypothetical
           protein Y87G2A.7 protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = -1

Query: 381 FLTIYNSAYFQ--DIKAEIADPGLEECGEMDVSSEDYWKCYIK---SRPSTYSITP 229
           FL I N   F+  ++ A++AD     CG + VSSEDY +  +K   S+PS   ITP
Sbjct: 323 FLEITNPFNFKWFNVVADLAD----RCGAVFVSSEDYRQRKMKINYSKPSGRIITP 374


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 311 NAVRWTSVVRIIGSVTSSPDRPPI 240
           N   W+SVV+I G +   PDRP I
Sbjct: 171 NMQAWSSVVKIEGELWLCPDRPEI 194


>Z77659-6|CAB01167.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.6 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -1

Query: 369 YNSAYFQDIKAEIADPGLEECGEMDVSSEDYWKCYIKSRPSTYSITPVHVPWAVWWTV 196
           YNS   +  K   +D  L E          Y   Y+K+ PS+Y+       W  +W V
Sbjct: 40  YNSLVLEPFKTT-SDEDLAELTIFRQKHASYLLRYLKNCPSSYATLDASRSWMCYWGV 96


>Z81485-11|CAJ21556.1|  449|Caenorhabditis elegans Hypothetical
           protein W06B3.2d protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 124 NTLAAGIMMAEKISDDIKNEYS 59
           NT  AG+  +E+  + IKNEYS
Sbjct: 398 NTWIAGVFQSERSREIIKNEYS 419


>Z81485-9|CAB03981.3|  498|Caenorhabditis elegans Hypothetical
           protein W06B3.2a protein.
          Length = 498

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 124 NTLAAGIMMAEKISDDIKNEYS 59
           NT  AG+  +E+  + IKNEYS
Sbjct: 447 NTWIAGVFQSERSREIIKNEYS 468


>AL022275-4|CAJ21562.1|  449|Caenorhabditis elegans Hypothetical
           protein W06B3.2d protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 124 NTLAAGIMMAEKISDDIKNEYS 59
           NT  AG+  +E+  + IKNEYS
Sbjct: 398 NTWIAGVFQSERSREIIKNEYS 419


>AL022275-2|CAA18361.3|  498|Caenorhabditis elegans Hypothetical
           protein W06B3.2a protein.
          Length = 498

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 124 NTLAAGIMMAEKISDDIKNEYS 59
           NT  AG+  +E+  + IKNEYS
Sbjct: 447 NTWIAGVFQSERSREIIKNEYS 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,782,563
Number of Sequences: 27780
Number of extensions: 216366
Number of successful extensions: 517
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)