Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0018.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    46   1e-07
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.32 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.42 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.42 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.42 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   0.97 
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   2.2  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   3.9  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   3.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   6.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   9.1  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 46.4 bits (105), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
 Frame = -3

Query: 238 HYSGTCAMG------SVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKISDD 77
           H +GT  MG      +VV  ++KV+GI  LRV D S  P ++  N +A+  M+ E+ +D 
Sbjct: 544 HQTGTAKMGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMVGERAADF 603

Query: 76  IKNEY 62
           IK ++
Sbjct: 604 IKEDW 608



 Score = 32.3 bits (70), Expect = 0.002
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 372 IYNSAYFQDIKAEIADPGLEECGEMDVSSEDYWKCYIK 259
           + N+   +D+  E     L++C E    S+DYW C I+
Sbjct: 499 LVNTTVMRDLGVEFQKIELKQCDEFVEDSDDYWNCVIQ 536


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -2

Query: 326 IPAWKNAVRWTSVVRIIGSVTSSPDRPPIPLLRYMCHGQCGG 201
           +P WK+ +  T       S T SP   P P   +   G C G
Sbjct: 203 LPKWKDGIPVTLTTVPKHSKTKSPKLRPYPNWEWHTVGNCDG 244


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 235 YSGTCAMGSVVDSKMKVYGIDNL 167
           +SG+CA G+ +DSK+    + NL
Sbjct: 530 FSGSCAPGAPLDSKLCQQCVGNL 552


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 235 YSGTCAMGSVVDSKMKVYGIDNL 167
           +SG+CA G+ +DSK+    + NL
Sbjct: 530 FSGSCAPGAPLDSKLCQQCVGNL 552


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 235 YSGTCAMGSVVDSKMKVYGIDNL 167
           +SG+CA G+ +DSK+    + NL
Sbjct: 530 FSGSCAPGAPLDSKLCQQCVGNL 552


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 95  RHHYASRQGIGSDDKRHGAHIDN 163
           RH +A++   G     HG HI++
Sbjct: 795 RHQHAAQMIYGHQQSHHGLHINS 817


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 321 GLEECGEMDVSSEDYWKCYIKSRPSTYSIT 232
           G+E CG  + +     KC +  R   Y+ T
Sbjct: 43  GMEACGIHETTYNSIMKCDVDIRKDLYANT 72


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 78 TLKMNIPFERNV 43
          T KMN+PFE  +
Sbjct: 60 TFKMNVPFEETL 71


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 78 TLKMNIPFERNV 43
          T KMN+PFE  +
Sbjct: 62 TFKMNVPFEETL 73


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 257 PDRPPIPLLRYMCHGQC 207
           P   P P+  Y C G+C
Sbjct: 41  PGCVPKPIPSYACRGRC 57


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 275 GSVTSSPDRPPI 240
           GSV   PD PP+
Sbjct: 152 GSVLDGPDSPPL 163


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 274 PIILTTDVHLTAF 312
           PIIL  ++HLT +
Sbjct: 178 PIILADELHLTEY 190


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -1

Query: 303 EMDVSSEDYWKC 268
           E + + E+YW+C
Sbjct: 57  ESEFNDENYWQC 68


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 46 CLGAFKINKI 17
          C+G +K+NKI
Sbjct: 70 CIGYYKLNKI 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,573
Number of Sequences: 438
Number of extensions: 2560
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)