Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0017.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   1.0  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   5.4  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   7.1  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    24   9.4  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 256 TGDHNSGTYPCGPTYYPGTGNYANF 330
           TGD ++ TY  GP  +P +GN  NF
Sbjct: 469 TGDPSNSTYG-GPQTFPNSGNNPNF 492


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 292 PTYYPGTGNYANFENLHAWXLLHTDIPSSWKMSMKALST 408
           PT   G GNY N  +L        ++P+ W  + KA+ T
Sbjct: 521 PTIGNGAGNYKNISDLSGAPSPPGEMPAGW--TSKAIGT 557


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 63  KRNCYYTFAKSKVRSP 110
           K NCY+ FA + +R+P
Sbjct: 514 KENCYFMFACAGIRTP 529


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 140 IRNYEHILNRNXXXXXLVNLHFCI 211
           +R Y  IL++N     L+N H CI
Sbjct: 778 LRQYRIILSKNHGIQVLLNRHGCI 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,659
Number of Sequences: 5004
Number of extensions: 25271
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)