Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0017.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 430 QFFXVESAYLTLSWTSSTMKVYQCVIKXKHEGFQNLRNYRCQG 302
           +FF  +     L W S T   YQ  ++ + E   ++ NY+  G
Sbjct: 136 EFFPFDEQRCVLKWASWTYDGYQLELEKQSEQ-GDVSNYQANG 177


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 250 SRTGDHNSGTYPCGPTYYP 306
           +R  +H +GT   GP+Y P
Sbjct: 539 TRAENHQTGTAKMGPSYDP 557


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 67  ETAITLSLNPK*DHH*KLRNSPQSNK 144
           + AI + + PK D H KL   P+  K
Sbjct: 513 KAAIRIFIGPKYDSHHKLIEIPEDLK 538


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 67  ETAITLSLNPK*DHH*KLRNSPQSNK 144
           + AI + + PK D H KL   P+  K
Sbjct: 513 KAAIRIFIGPKYDSHHKLIEIPEDLK 538


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 369 TFIVEDVHESVKY 407
           T I+ + HE+VKY
Sbjct: 52  TEIINETHENVKY 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,396
Number of Sequences: 438
Number of extensions: 1594
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)