Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0017.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16563.1 68417.m02506 aspartyl protease family protein contai...    30   0.83 
At3g51420.1 68416.m05632 strictosidine synthase family protein s...    28   2.5  
At5g18780.1 68418.m02231 F-box family protein contains F-box dom...    27   5.9  

>At4g16563.1 68417.m02506 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 499

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 232 NVHLVLSRTGDHNSGTYPCGPTYY 303
           N  L    TGD N+ +YPC P YY
Sbjct: 163 NCPLDFIETGDCNTSSYPCPPFYY 186


>At3g51420.1 68416.m05632 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088
          Length = 370

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 340 HAWXLLHTDIPSSWKMSMKAL 402
           H W  L +++ +SWK+SMK L
Sbjct: 271 HYWIALISEVTTSWKLSMKYL 291


>At5g18780.1 68418.m02231 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 441

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 367 YQCVIKXKHEGFQNLRNYRCQGSK*ARMGRY 275
           Y  VI      + NL++Y+CQG K   M  Y
Sbjct: 225 YTVVIDTPRLEYLNLKDYQCQGFKIVSMSEY 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,192
Number of Sequences: 28952
Number of extensions: 122293
Number of successful extensions: 230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)