Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0016.Seq
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    70   2e-13
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    52   2e-08
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    39   3e-04
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    36   0.002
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    36   0.002
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    34   0.009
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.27 
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    27   1.1  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    25   4.3  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    24   7.6  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   10.0 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    24   10.0 
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   10.0 

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI-DYSGGRQ 178
           APEY  AA +L  E+  I L +VD T+E DL   Y +RGYPTL  F+NG  I  YSG R+
Sbjct: 58  APEYESAADEL--EKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSGPRK 115

Query: 179 ADDIISWLKKKTGPPAVEVTSAEQAKN 259
            D ++ +++K+   P V+  S +  +N
Sbjct: 116 HDALVKYMRKQL-LPTVKPISKDTLEN 141



 Score = 44.8 bits (101), Expect = 5e-06
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNG---SPIDYSGG 172
           AP Y K A + +++ S + +AK+DAT E D++ S  + G+PT+ FF+     +P+ Y G 
Sbjct: 392 APTYEKLAEEYSDD-SNVVVAKIDAT-ENDISVS--ISGFPTIMFFKANDKVNPVRYEGD 447

Query: 173 RQADDIISWLKK 208
           R  +D+ +++ K
Sbjct: 448 RTLEDLSAFIDK 459


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 52.4 bits (120), Expect = 2e-08
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF-RNGS-PIDYSGGR 175
           AP Y +    L E+ + + + K+DA    D+A+ Y + G+PTL +F  +GS P+ YS  R
Sbjct: 58  APVYEELGA-LFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNAR 116

Query: 176 QADDIISWLKKKTG 217
             D +  ++ +KTG
Sbjct: 117 DVDSLTQFVSEKTG 130



 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF---RNGSPIDYSGG 172
           AP Y +   K+ + E  +++ K++A    D+   + V  +PT+KFF       P  Y G 
Sbjct: 177 APTY-ETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGD 235

Query: 173 RQADDIISWLKKKTG 217
           R  + +I ++ KK+G
Sbjct: 236 RSLESLIEYINKKSG 250


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGR-- 175
           +P +++ A+K A  +     AKV+  +++ +A   GV+  PT  FF NG  ID   G   
Sbjct: 38  SPLFSQLASKYASPK--FVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANP 95

Query: 176 QA--DDIISWLKKKTGPPAVEVTSAEQAK 256
           QA  + +     K TG  A+  +S+   K
Sbjct: 96  QALKEKVALISSKATGTGALASSSSAPVK 124


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 12/65 (18%), Positives = 36/65 (55%)
 Frame = +2

Query: 53  IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVE 232
           +K+A+V+  +E+++   + ++ +PT + F+    I Y+G  +   ++S+  +     A++
Sbjct: 230 LKMAQVNCDEEKEMCNHFHIKKFPTFRVFQGFDSIQYNGPLKYQQLLSYSNQVASYQAIK 289

Query: 233 VTSAE 247
           +   +
Sbjct: 290 IEEGD 294



 Score = 28.3 bits (60), Expect = 0.46
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +2

Query: 92  LAESYGVRGYPTLKFFRNGSPIDYSG--GRQADD---IISWLKKKTGPPAVEVT 238
           LA  YG +  P++   RNG PI Y     R+  D   I  W+   + P   E+T
Sbjct: 343 LANKYGAQSQPSIIAVRNGMPIVYQAITPREFRDYKRITEWINIVSSPFITELT 396


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 29  KLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 208
           KL+E+        V+A +  D+A+  GV   PT+  FR G  +D   G     + S L K
Sbjct: 59  KLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAK 118


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 33.9 bits (74), Expect = 0.009
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
 Frame = +2

Query: 5   PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF---RNGSPI---DYS 166
           P Y K A+ L     P+     DA Q + +   Y V+G+PT+K       GS +   DY+
Sbjct: 68  PTYQKLASNL-HSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYN 126

Query: 167 GGRQADDIISWLKKKTGPPAVEVTSAE 247
           G R    +  ++     P  V++ ++E
Sbjct: 127 GDRSYKSLQKFVSDSI-PSKVKILTSE 152


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 10/52 (19%), Positives = 28/52 (53%)
 Frame = +2

Query: 53  IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 208
           + +A ++    +   + Y ++ +PT  FF+  + ++Y G     D++S+ ++
Sbjct: 331 LNVAHINCAVSKRACKQYSIQYFPTFLFFKEEAFVEYVGLPNEGDLVSFAEE 382



 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 41  EESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
           E S     +VD ++E  L+    +R  PTL  ++NG  ++
Sbjct: 76  EGSNFHFGEVDCSKE--LSSCANIRAVPTLYLYQNGEIVE 113


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 65  KVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
           KVD  Q  ++A   GV   P+   ++NG  I+
Sbjct: 54  KVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIE 85


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 155 IDYSGGRQADDIISWLKKKTGPPAVEVTSAEQA 253
           ++ SGG + D +I W+ K TG  A  ++   +A
Sbjct: 389 VNNSGGPKFDIVIPWIGKPTGFHASTISEYAEA 421


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 232 LNSRGASLLLQPTDDVISLTTT*IVDR 152
           L+ RG   + QPTDD   L T+ ++ R
Sbjct: 127 LSKRGGPSMFQPTDDCAYLGTSYVLIR 153


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 71  DATQEQDLAESYGVRGYPTLKFFRNGSP 154
           D +  Q+L ES G   YP++ FF    P
Sbjct: 665 DDSTTQNLTESLGSVCYPSMPFFNQYVP 692


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 229 NSRGASLLLQPTDDVISLTT 170
           NS GAS  ++P+DD ++  T
Sbjct: 5   NSDGASTSVKPSDDAVNTVT 24


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 104 YGVRGYPTLKFFRNGSPID 160
           Y + GYP+  F +NGS I+
Sbjct: 177 YMLIGYPSFFFLKNGSKIE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,555
Number of Sequences: 5004
Number of extensions: 22626
Number of successful extensions: 65
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)