Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0016.Seq
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 87 4e-18
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 87 6e-18
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091... 76 1e-14
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 69 2e-12
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 68 2e-12
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210... 67 4e-12
06_01_0452 + 3198475-3198962,3199062-3199191,3199332-3199497,319... 66 7e-12
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 66 1e-11
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716... 65 2e-11
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 48 2e-06
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888... 44 3e-05
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 40 0.001
04_04_0598 - 26514226-26514545,26516080-26516302 40 0.001
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 38 0.004
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005... 37 0.007
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 33 0.083
04_04_1575 + 34548774-34549109,34549979-34550185 32 0.15
08_02_0497 - 17811413-17811529,17811644-17811724,17812693-178128... 32 0.19
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814... 31 0.44
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 30 0.59
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 1.0
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 29 1.0
02_04_0285 - 21585048-21585173,21585302-21585355,21585512-21585952 28 2.4
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207... 28 3.1
07_03_0710 - 20873420-20874745 27 5.5
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 27 5.5
06_01_0825 + 6233525-6233740,6234274-6234461,6234544-6234668,623... 27 5.5
02_05_0792 - 31777775-31778220,31778506-31778630,31778724-317789... 27 7.2
04_03_0975 - 21370715-21370877,21371227-21371319,21371383-213714... 26 9.5
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 87.4 bits (207), Expect = 4e-18
Identities = 38/85 (44%), Positives = 57/85 (67%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
AP+YA AA L+ + LAKVDAT++ DLA+ Y V+G+PT+ FF +G P DY+G R
Sbjct: 109 APDYAAAAADLSPLAHQVALAKVDATEDTDLAQKYDVQGFPTILFFIDGVPKDYNGARTK 168
Query: 182 DDIISWLKKKTGPPAVEVTSAEQAK 256
+ I+SW+ KK P +T+ ++A+
Sbjct: 169 EAIVSWVNKKLAPGVQNITTVDEAE 193
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 86.6 bits (205), Expect = 6e-18
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQD--LAESYGVRGYPTLKFFRN-GSPI-DYSG 169
APEY KAA +L++ + PI LAKVDA E++ LA Y ++G+PTLK FRN G I +Y G
Sbjct: 76 APEYEKAAQELSKHDPPIVLAKVDANDEKNKPLATKYEIQGFPTLKIFRNQGKNIQEYKG 135
Query: 170 GRQADDIISWLKKKTGPPAVEVTSAEQAKN 259
R+A+ I+ +LKK+ GP + E+ S E A N
Sbjct: 136 PREAEGIVEYLKKQVGPASKEIKSPEDATN 165
Score = 52.4 bits (120), Expect = 1e-07
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFR-NGSPIDYSGGRQ 178
AP +AAT L ++ + +AK+DAT D+ + V+GYPTL F +G + Y GR
Sbjct: 421 APILDEAATTLKSDKDVV-IAKMDATAN-DVPSEFDVQGYPTLYFVTPSGKMVPYESGRT 478
Query: 179 ADDIISWLKKKTGPPAVEVTSAEQA 253
AD+I+ ++KK AE A
Sbjct: 479 ADEIVDFIKKNKETAGQAKEKAESA 503
>04_03_1011 -
21708503-21708544,21708689-21708898,21709000-21709112,
21709232-21709349,21709386-21709412,21709671-21709808,
21710069-21710194,21710279-21710467,21710598-21710885,
21710937-21711024,21711120-21711298
Length = 505
Score = 75.8 bits (178), Expect = 1e-14
Identities = 39/86 (45%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Frame = +2
Query: 8 EYAKAATKLAEEESPIKLAKVDATQEQ--DLAESYGVRGYPTLKFFRNG-SPI-DYSGGR 175
+Y KAA+ L + E P+ LAKVDA E+ +L + YGV YPT+K +NG S + Y G R
Sbjct: 89 KYEKAASILRKNELPVVLAKVDAYNERNKELKDKYGVYSYPTIKIMKNGGSDVRGYGGPR 148
Query: 176 QADDIISWLKKKTGPPAVEVTSAEQA 253
+AD I+ +LK++ GP ++++ SAE+A
Sbjct: 149 EADGIVEYLKRQVGPASLKLESAEEA 174
Score = 50.0 bits (114), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 EEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRN-GSPIDYSGGRQADDIISWLKKKT 214
+++ I +AK+D T D+ + V GYPT+ F+ + G+ + Y G R A++IIS++ +
Sbjct: 412 QDDQDIVIAKMDGTVN-DIPTDFTVEGYPTIYFYSSSGNLLSYDGARTAEEIISFINENR 470
Query: 215 GPPAVEVTSAEQ 250
GP A + ++
Sbjct: 471 GPKAGAAAAVDE 482
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 68.5 bits (160), Expect = 2e-12
Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQE--QDLAESYGVRGYPTLKFFRN--GSPIDYSG 169
APEY AA L + P+ LAKVDA+ + + LA +GV+GYPT++ R+ +Y+G
Sbjct: 61 APEYEAAAAALRSHDPPVVLAKVDASADLNRGLAGEHGVQGYPTIRILRDRGARSHNYAG 120
Query: 170 GRQADDIISWLKKKTGPPAVEVTSA 244
R A I+++LK++ GP +VE+ ++
Sbjct: 121 PRDAAGIVAYLKRQAGPASVEIAAS 145
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 68.1 bits (159), Expect = 2e-12
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI--DYSGGR 175
AP Y K A+ ++ + +A +DA + +DLAE YGV GYPTLKFF G+ DY GGR
Sbjct: 156 APIYEKLASVYKLDDGVV-IANLDADKHKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGR 214
Query: 176 QADDIISWLKKKTG 217
+ DD + ++ +K G
Sbjct: 215 ELDDFVKFINEKCG 228
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS--PIDYSGGR 175
APEY K + +S + +AKVD + + + YGV GYPT+++F GS P Y G R
Sbjct: 37 APEYEKLGASFKKAKS-VFIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQR 95
Query: 176 QADDIISWLKKKTG 217
A+ + ++ + G
Sbjct: 96 SAEALAEFVNTEGG 109
>02_04_0182 +
20719782-20720033,20720502-20720605,20720693-20721066,
20721302-20721609,20721853-20722092
Length = 425
Score = 67.3 bits (157), Expect = 4e-12
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
AP+ +AA LA +PI +AKV+A + + L YGV G+PTL F +G+P +Y+G R+A
Sbjct: 82 APQLDEAAPVLAGLSTPIVVAKVNADKYKKLGSKYGVDGFPTLMLFDHGTPTEYTGSRKA 141
Query: 182 DDIISWLKKKTGPPAVEVTSAEQA 253
D ++ LKK P V V ++ A
Sbjct: 142 DLLVENLKKLVAPD-VSVLESDSA 164
>06_01_0452 +
3198475-3198962,3199062-3199191,3199332-3199497,
3199765-3199883,3200056-3200136,3200236-3200322,
3200644-3200715,3200791-3200859,3201349-3201426,
3201540-3201680,3202333-3202386,3202465-3202581
Length = 533
Score = 66.5 bits (155), Expect = 7e-12
Identities = 30/84 (35%), Positives = 49/84 (58%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
P +A+AA L S + AK+D + A + GV+G+PT+ F NG+ ++G D
Sbjct: 105 PRFAEAAAALRAMGSAVAFAKLDGERYPKAASAVGVKGFPTVLLFVNGTEHQFTGLHTKD 164
Query: 185 DIISWLKKKTGPPAVEVTSAEQAK 256
I++W++KKTG PA + S + A+
Sbjct: 165 AIVTWVRKKTGAPASRIQSKDSAE 188
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 65.7 bits (153), Expect = 1e-11
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI--DYSGGR 175
AP Y K A+ ++E + +A +DA + LAE YGV G+PTLKFF G+ DY GGR
Sbjct: 185 APIYEKLASVYKQDEGVV-IANLDADKHTALAEKYGVSGFPTLKFFPKGNKAGEDYDGGR 243
Query: 176 QADDIISWLKKKTG 217
+ DD + ++ +K G
Sbjct: 244 ELDDFVKFINEKCG 257
Score = 51.2 bits (117), Expect = 3e-07
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS--PIDYSGGR 175
APEY K + +S + +AKVD + + + YGV GYPT+++F GS P Y G R
Sbjct: 66 APEYEKLGASFKKAKS-VLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQR 124
Query: 176 QADDIISWLKKK 211
A+ + ++ +
Sbjct: 125 TAEALAEYVNSE 136
>04_03_0988 -
21469811-21469831,21470823-21471047,21471327-21471634,
21471864-21472234,21472327-21472430,21473086-21473325
Length = 422
Score = 64.9 bits (151), Expect = 2e-11
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
APE +AA LA PI +AKV+A + + L YGV G+PTL F +G PI+Y+G R+A
Sbjct: 78 APELDEAAPVLAGLSEPIIVAKVNADKYRKLGSKYGVDGFPTLMLFIHGVPIEYTGSRKA 137
Query: 182 DDIISWLKKKTGPPAVEVTSAEQA 253
D ++ L K P V + ++ A
Sbjct: 138 DLLVRNLNKFVAPD-VSILESDSA 160
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 48.4 bits (110), Expect = 2e-06
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +2
Query: 59 LAKVDATQEQDLAESYGVRGYPTLKFFRNGS-PIDYSGGRQADDIISW 199
+A +DA ++LA+ YG+RG+PT+K F G P+DY G R I+ +
Sbjct: 82 VAALDADAHKELAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIVEF 129
>07_03_0651 +
20287661-20287701,20288034-20288124,20288737-20288831,
20289433-20289523,20290066-20290250,20290590-20290647,
20290812-20290852,20290935-20291009,20292298-20292354,
20292480-20292546,20292754-20292900,20292986-20293210,
20293332-20293493,20293570-20293647,20293735-20293812
Length = 496
Score = 44.4 bits (100), Expect = 3e-05
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 5 PEYAKAATKLAEEESP-----IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSG 169
P + K A + E P I LAKVD T+E DL + ++GYP+++ FR GS + +
Sbjct: 189 PSWEKTAKIMRERYDPEMDGRIILAKVDCTEEIDLCRRHHIQGYPSIRIFRKGSDLKENQ 248
Query: 170 G 172
G
Sbjct: 249 G 249
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 65 KVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEVTS 241
KVD + +++AE Y V PT F ++G+ D G + DD+ + + K G A ++
Sbjct: 64 KVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASASA 122
>04_04_0598 - 26514226-26514545,26516080-26516302
Length = 180
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 29 KLAEE-ESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
KL++E E +K K++ + D+A YGVR PT+ F+NG D
Sbjct: 115 KLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMMIFKNGEKKD 159
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +2
Query: 32 LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKK 211
LA + S +V+A ++ +++E+YGV P F + G +D G + + + K
Sbjct: 45 LAVDFSHAVFLRVEAEEQPEISEAYGVTAVPYFVFLKEGKTVDTLEGANPASLANKVAKL 104
Query: 212 TGPPAV 229
GP +V
Sbjct: 105 AGPASV 110
>02_05_0085 -
25697860-25698142,25698631-25698946,25700481-25700518,
25700955-25701036,25701815-25702016
Length = 306
Score = 36.7 bits (81), Expect = 0.007
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 29 KLAEE-ESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID-YSGGRQADDIISWL 202
KL++E E + K++ + D+A +G+R PT+ F+NG D G ++S +
Sbjct: 148 KLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAVIGAVPESTLVSSI 207
Query: 203 KKKTGPPAVEVTSAEQ 250
K G AEQ
Sbjct: 208 DKYIGRETSTQDLAEQ 223
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 33.1 bits (72), Expect = 0.083
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 32 LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLK 205
LA++ + KVD + + +AE + V PT F + G D G D++ S L+
Sbjct: 59 LAKKHTNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLE 116
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 38 EEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI 157
E E +K+ K+D L E Y V G P+L F++G +
Sbjct: 113 EYEGRLKIVKIDHDANPQLIEEYKVYGLPSLILFKDGKEV 152
>08_02_0497 -
17811413-17811529,17811644-17811724,17812693-17812815,
17812945-17813193
Length = 189
Score = 31.9 bits (69), Expect = 0.19
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 38 EEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF 139
E E+ KVD E +LA VRG PTL FF
Sbjct: 128 EYENNALFVKVDTDDEYELARDMQVRGLPTLYFF 161
>03_06_0376 +
33479776-33479958,33481055-33481236,33481345-33481469,
33481858-33482057,33482629-33482762,33483095-33483158,
33483764-33484441,33484723-33484839
Length = 560
Score = 30.7 bits (66), Expect = 0.44
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 92 LAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTG 217
L YGVRG+P + + + Y G + ++ + K+ TG
Sbjct: 123 LFSRYGVRGFPAILLVNETTMVRYWGPKDLSSLVDFYKETTG 164
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 30.3 bits (65), Expect = 0.59
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 32 LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
LAE+ + KVD + +A + V P+ F RNG ID
Sbjct: 684 LAEKHRNVVFLKVDIDELNSVAYRWNVSSVPSFFFVRNGKEID 726
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 53 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI 157
I KVD ++ +A + VR PT K ++NG+ +
Sbjct: 618 ISFLKVDISESPAVARAENVRTVPTFKIYKNGTRV 652
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
AP YA+ +++ +D + D + S+ +R PT F +NG +D
Sbjct: 562 APVYAE----MSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVD 610
>02_04_0285 - 21585048-21585173,21585302-21585355,21585512-21585952
Length = 206
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 68 VDATQEQ-DLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGP 220
+D EQ ++A+ ++ P F++NG ++ R + II+ ++K T P
Sbjct: 149 IDEYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFATRDKERIIAAIQKYTAP 200
>01_01_0255 +
2079112-2079196,2079334-2079514,2079712-2079853,
2079934-2080003,2080140-2080303
Length = 213
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 110 VRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTGPPAV 229
VR + T K F P+ D GG +A DII W +++ V
Sbjct: 5 VRTHRTTKLFGRERPLHDALGGHKAADIILWRERRVSASIV 45
>07_03_0710 - 20873420-20874745
Length = 441
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 273 IGINKFLACSADVTSTAGGPVFFFSQLMMSSA 178
+G+ +F C +TA P+F S +SSA
Sbjct: 234 LGVTRFSYCFTPFNATAASPLFLGSSARLSSA 265
>07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 113 RGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPP 223
RG+ T + G+ YSGG++ I WL+ G P
Sbjct: 1459 RGFHTNLYAVRGT---YSGGKEGKSKIQWLRSMVGSP 1492
>06_01_0825 +
6233525-6233740,6234274-6234461,6234544-6234668,
6234858-6234917,6235043-6235074
Length = 206
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 104 YGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTG 217
YG+ GYPTL + + Y G R + ++ +G
Sbjct: 140 YGIHGYPTLFLINSTVRVRYHGPRTVKSLAAFYNDVSG 177
>02_05_0792 -
31777775-31778220,31778506-31778630,31778724-31778911,
31779716-31779892
Length = 311
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 104 YGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTG 217
YG+ G+PTL + + Y G R + ++ + +G
Sbjct: 127 YGIHGFPTLFLLNSTMRVRYHGPRTVKSLAAFYRDVSG 164
>04_03_0975 -
21370715-21370877,21371227-21371319,21371383-21371466,
21371745-21371869,21372360-21372600,21373640-21373734
Length = 266
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 53 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNG 148
IK K+D +A SY + PT+ F++G
Sbjct: 66 IKCYKLDTDDYPQVATSYSIERIPTVLLFKDG 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,386,963
Number of Sequences: 37544
Number of extensions: 165111
Number of successful extensions: 402
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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