Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0016.Seq
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 114 2e-26
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 6e-17
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 83 6e-17
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 62 2e-10
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 56 8e-09
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 52 1e-07
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 9e-06
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 46 1e-05
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 45 3e-05
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 36 0.016
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 34 0.049
SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.20
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.20
SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.20
SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_8819| Best HMM Match : I-set (HMM E-Value=0) 29 1.8
SB_31331| Best HMM Match : Thioredoxin (HMM E-Value=1.2) 28 2.4
SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74) 26 9.8
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 114 bits (275), Expect = 2e-26
Identities = 51/86 (59%), Positives = 67/86 (77%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
APEYAKAA +L E+S IKLAKVDAT E L E + V+GYPT+KFF++G P +Y+GGR A
Sbjct: 60 APEYAKAAGQLKSEKSEIKLAKVDATAETKLGEKFQVQGYPTIKFFKDGKPSEYAGGRTA 119
Query: 182 DDIISWLKKKTGPPAVEVTSAEQAKN 259
+I+SWL KKTGPPA ++ +A+ K+
Sbjct: 120 PEIVSWLNKKTGPPAKDLATADAMKD 145
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = +2
Query: 38 EEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF-RNGSPIDYSGGRQADDIISWLK--- 205
++ + I +AK+D+T + E V +PT+K+F + G +DY+GGR DD + +L+
Sbjct: 432 KDHADIVVAKMDSTANE--VEGVKVHSFPTIKYFPKEGEAVDYNGGRTLDDFVKFLESGG 489
Query: 206 KKTGPPAVE 232
K PA E
Sbjct: 490 KAGNEPAAE 498
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 283 VFGFFSDQSSSRAKTFLSTXXVVDDQVFAI 372
V GFF+D+ S AK FLS +DD F I
Sbjct: 153 VVGFFTDKESDAAKAFLSAADGIDDVEFGI 182
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 83.4 bits (197), Expect = 6e-17
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
APEYAKAA K+ + P+ AK+DAT D+A+ + V GYPTLK FR G+P +Y G R+
Sbjct: 97 APEYAKAAKKMKLNDPPVPFAKMDATVASDIAQRFDVSGYPTLKIFRKGTPYEYEGPREE 156
Query: 182 DDIISWLKKKTGP 220
I+ ++KK++ P
Sbjct: 157 SGIVEYMKKQSDP 169
Score = 79.4 bits (187), Expect = 1e-15
Identities = 38/86 (44%), Positives = 55/86 (63%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
APEY KAA +L + + PI LA VDAT E +LA+ Y V+GYPTLK FR G +Y G R
Sbjct: 212 APEYEKAAQELQKHDPPIPLAIVDATIESELAQKYEVQGYPTLKVFRKGKATEYKGQRDQ 271
Query: 182 DDIISWLKKKTGPPAVEVTSAEQAKN 259
I S+++ + GP + ++S + ++
Sbjct: 272 YGIASYMRSQVGPSSRILSSLKAVQD 297
Score = 44.4 bits (100), Expect = 3e-05
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNG---SPIDYSGGR 175
P + K +++ I +AK+DAT D+ +Y V G+PT+ F + +PI + GGR
Sbjct: 561 PTFKKLGKHFRNDKN-IVIAKIDATAN-DVPSTYAVEGFPTIYFATSKDKKNPIKFDGGR 618
Query: 176 QADDIISWLKKKTGPPAVEVTSAEQAKN 259
+ D+I ++++K A S E+AK+
Sbjct: 619 ELKDLIKFVEEK----ATVSLSKEKAKD 642
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 83.4 bits (197), Expect = 6e-17
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQE-QDLAESYGVRGYPTLKFFRNGS-PIDYSGGR 175
APEY AA L + + P+ LAKVD T+ +D YGV GYPTLK FRNG DY G R
Sbjct: 574 APEYETAAEALKKNDPPVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNGEMSKDYDGPR 633
Query: 176 QADDIISWLKKKTGPPAVEVTSAE 247
+ II ++KK+ GP +VE+ S +
Sbjct: 634 DSSGIIRYMKKQAGPSSVEIKSVD 657
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 104 YGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTG 217
+G+ +PTLK FR G P DY+G + + S++ + G
Sbjct: 448 FGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYIHDQLG 486
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 61.7 bits (143), Expect = 2e-10
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS--PIDYSGGR 175
AP Y + + S + +AKVDA ++DL + V+G+PT+K+F GS P +Y+GGR
Sbjct: 58 APTYEQLGEAYTQS-SDVIIAKVDADGDRDLGSRFDVKGFPTIKYFPKGSTTPEEYNGGR 116
Query: 176 QADDIISWLKKKTG 217
+D I ++++KTG
Sbjct: 117 DINDFIKFIEEKTG 130
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 56.4 bits (130), Expect = 8e-09
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNG-----SPIDYS 166
APE+AKAAT+L + +K+ +DAT A Y V+GYPT+K F G S DY
Sbjct: 116 APEWAKAATEL---KGKVKVGALDATVHTVTASRYQVQGYPTIKVFAAGIKNSHSVEDYQ 172
Query: 167 GGRQADDIISWLKKK 211
GGR A DII + K
Sbjct: 173 GGRTASDIIQYALDK 187
Score = 35.9 bits (79), Expect = 0.012
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 86 QDLAESYGVRGYPTLKFF--RNGSPIDYSGGRQADDII 193
Q + Y +RG+PT+K F SP DY+G R A I+
Sbjct: 5 QSVGGPYNIRGFPTIKIFGANKNSPQDYNGQRTAQGIV 42
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 52.4 bits (120), Expect = 1e-07
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS-PIDYSGGRQA 181
P+Y KAA ++ + + AK+D T+ D+ + V GYPTL+++ G ++Y G R
Sbjct: 184 PKYEKAAETFKDQPNRV-FAKLDCTKFGDVCDKEEVNGYPTLRYYLYGKFVVEYDGDRVT 242
Query: 182 DDIISWLKKKTGPPAVEVTSAEQAKN 259
+D+IS++++ P ++ +Q KN
Sbjct: 243 EDLISFMEEPP-LPLSDIPKDQQEKN 267
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
P Y KAA L +E++ LA VD T+ +D+A+ + GYPT+K ++ + + +
Sbjct: 87 PNYYKAAQVLHDEDANCNLAAVDCTKHKDVAKKVALAGYPTVKLYKASNTAKAASAEEDS 146
Query: 185 DIISWL 202
++ L
Sbjct: 147 SLVKQL 152
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 46.4 bits (105), Expect = 9e-06
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
PEY KAA + P+ VD T L Y +R YPT + N P + G A
Sbjct: 322 PEYRKAARSFVGK--PVGFGTVDCTVHSQLCHQYNIRSYPTTILYNNSQPHQFIGHHNAL 379
Query: 185 DIISWLK 205
DII +++
Sbjct: 380 DIIEFVE 386
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF 139
AP+Y + A L + ++ AKV+ Q+ L + YPT++ +
Sbjct: 470 APKYEQLAKML---KGKVRAAKVNCEQDYGLCSEANIHSYPTVRLY 512
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
P + + ++E+ + +AKVD T + +L +R YPT+K + +G Y+G R A+
Sbjct: 3 PAWEALGEQYSKEKRDLTIAKVDCTSDVNLCVKQNIRAYPTMKLYYDGDIKRYTGRRNAE 62
Query: 185 DIISWLKK 208
D+ ++ K
Sbjct: 63 DMKVFVDK 70
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 110 VRGYPTLKFFRNG-SPIDYSGGRQADDIISWL 202
+ GYPTL F++G +YSG R D + ++
Sbjct: 146 INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 177
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPT 127
PEY AA L E+E P LA VDAT+E L + + V GYPT
Sbjct: 119 PEYVDAAQTLKEQEIPGVLAAVDATKEAALGKRFKVEGYPT 159
Score = 35.9 bits (79), Expect = 0.012
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 53 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWL-KKKTGPP 223
I A VD T+E + + +GV GY F + Y+ GR+A D I ++ + GPP
Sbjct: 268 IAYAAVDCTKEMAVCQQFGVEGY----FNYGKNDFKYTSGREAKDFIQFMDDPREGPP 321
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 35.5 bits (78), Expect = 0.016
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 14 AKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
A T L+ + + KVD Q Q AES G+R PT F+ N + ID
Sbjct: 47 APVFTNLSMKFMDVVFLKVDVDQCQLTAESCGIRAMPTFHFYHNKAKID 95
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 33.9 bits (74), Expect = 0.049
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 32 LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKK 211
L+E+ K+D Q+LA GV PT +FF+N +D G + +KK
Sbjct: 52 LSEKYKQAVFLKIDVDVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALEDAIKKW 111
Query: 212 TG 217
G
Sbjct: 112 IG 113
>SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 104 YGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTG 217
+G+ +PTLK FR G P DY+G + + S++ + G
Sbjct: 251 FGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYIHDQLG 289
>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 31.9 bits (69), Expect = 0.20
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 32 LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
+AE++ + LAKVD +LA ++GV PT+ + G I+
Sbjct: 17 IAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVIN 59
>SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 32 LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDY 163
+AE++ + LAKVD +LA ++GV PT+ + G +++
Sbjct: 63 IAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVMEH 106
>SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 110 VRGYPTLKFFRNG-SPIDYSGGRQADDIISWL 202
+ GYPTL F++G +YSG R D + ++
Sbjct: 1 INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 32
>SB_8819| Best HMM Match : I-set (HMM E-Value=0)
Length = 1789
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 56 KLAKVDATQEQDLAESYGVRGYP--TLKFFRNGSPI 157
KL V T+E D + V G P T+K+F++G P+
Sbjct: 1042 KLQPVQVTEEDDCKLTCKVSGLPEPTIKWFKDGEPV 1077
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 56 KLAKVDATQEQDLAESYGVRGYP--TLKFFRNGSPI 157
KL + T+E + + V G P T+K+F++G P+
Sbjct: 1331 KLQPIQVTEEDECKLTCKVSGLPEPTIKWFKDGEPV 1366
>SB_31331| Best HMM Match : Thioredoxin (HMM E-Value=1.2)
Length = 214
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 53 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSG 169
+ +A V+ +E +LA+ GV+ + F G ++Y G
Sbjct: 104 VTVAAVNVAEEYELAQKLGVKFSGAISVFHRGKRVEYYG 142
>SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)
Length = 146
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 265 DANTXIVFGFFSDQSSSRAKTFLSTXXVVDDQVF 366
DAN I F S QSS + F++T + D ++
Sbjct: 9 DANNSIGFEVGSSQSSGQTSAFITTLCQLKDAIY 42
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,204,512
Number of Sequences: 59808
Number of extensions: 165016
Number of successful extensions: 492
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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