Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0016.Seq
         (398 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    31   0.021
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   5.4  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   7.2  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            22   9.5  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 30.7 bits (66), Expect = 0.021
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
           AP+  +   K A++   I + KVD  + ++LA  Y +   PT  F +    +    G  A
Sbjct: 39  APKLEEFQNKYADK---IVVVKVDVDECEELAAQYNIASMPTFLFIKRKEVVGQFSGANA 95

Query: 182 DDIISWLKK 208
           + + +++++
Sbjct: 96  EKLENFIQQ 104


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = +2

Query: 17  KAATKLAEEESPIKL-------AKVDATQEQDLAE-SYGVRGYPTLKFF-RNGSPIDYSG 169
           K  T+L EE +P          A +   +++ + E S+  R  P  +   RNGSPI++ G
Sbjct: 8   KRTTRLPEEGAPTGAGPGTGDRASIQRLEDEMVQERSFSQRALPVPRTQNRNGSPINHQG 67

Query: 170 GRQADDI 190
              + ++
Sbjct: 68  NAASANV 74


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 256  LSLFSRRDLNSRGASLLLQPTDDVISLTTT*IVDRTAIPEEFESRVSSY 110
            +SL + R +N     ++ +P D  +   T+    +    ++ E R SSY
Sbjct: 1175 ISLVTVRHVNETSKFVVFRPVDSFLLKMTSLFTKQRVRLDQDELRTSSY 1223


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 197  WLKKKTGPPAVEVTSAEQA 253
            ++KK TGP AVE+    +A
Sbjct: 991  YVKKSTGPHAVELNKYMKA 1009


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,671
Number of Sequences: 2352
Number of extensions: 5493
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)