Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0016.Seq
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.74 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   3.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 226 SRGASLLLQPTDDVISLTTT*IVDRTAIPEEFESRVSSYTVALGEILFLSC 74
           ++G  L   P   +  LTT  ++ +  IP+E     S YT  + +I    C
Sbjct: 270 AKGGKLACPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDC 320


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 273 YXYCIWXLFG 302
           Y YC+W  FG
Sbjct: 72  YMYCLWEQFG 81


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 91  SRRELRCTRIPDSQILQEWQSYRLFRWSS 177
           SR+   C+R  + +  +   SYR +R +S
Sbjct: 268 SRKRYSCSREREQKSYKNENSYRKYRETS 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,981
Number of Sequences: 438
Number of extensions: 1393
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)