Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0016.Seq
(398 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s... 90 6e-19
At5g60640.2 68418.m07611 thioredoxin family protein similar to p... 89 1e-18
At5g60640.1 68418.m07610 thioredoxin family protein similar to p... 89 1e-18
At1g21750.2 68414.m02723 protein disulfide isomerase, putative s... 86 7e-18
At1g21750.1 68414.m02722 protein disulfide isomerase, putative s... 86 7e-18
At1g52260.1 68414.m05897 thioredoxin family protein similar to p... 79 1e-15
At3g54960.1 68416.m06094 thioredoxin family protein similar to p... 74 4e-14
At3g16110.1 68416.m02035 thioredoxin family protein similar to p... 71 4e-13
At2g47470.2 68415.m05924 thioredoxin family protein similar to p... 68 2e-12
At2g47470.1 68415.m05925 thioredoxin family protein similar to p... 68 2e-12
At1g35620.1 68414.m04425 thioredoxin family protein similar to S... 57 5e-09
At2g32920.1 68415.m04036 thioredoxin family protein similar to S... 50 8e-07
At1g04980.1 68414.m00497 thioredoxin family protein similar to S... 48 2e-06
At4g27080.1 68417.m03893 thioredoxin family protein contains Pfa... 46 7e-06
At1g50950.1 68414.m05728 thioredoxin-related contains weak hit t... 39 0.001
At3g20560.1 68416.m02603 thioredoxin family protein contains Pfa... 38 0.002
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 37 0.004
At4g04950.1 68417.m00719 thioredoxin family protein similar to P... 36 0.010
At1g34780.1 68414.m04329 protein disulfide isomerase-related con... 36 0.010
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 35 0.017
At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL) i... 35 0.017
At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identica... 34 0.040
At1g76760.1 68414.m08933 thioredoxin family protein similar to t... 32 0.12
At1g07960.3 68414.m00867 thioredoxin family protein low similari... 32 0.12
At1g07960.2 68414.m00866 thioredoxin family protein low similari... 32 0.12
At1g07960.1 68414.m00865 thioredoxin family protein low similari... 32 0.12
At3g08710.1 68416.m01012 thioredoxin family protein similar to t... 31 0.21
At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1) i... 31 0.28
At4g32580.1 68417.m04638 thioredoxin family protein contains Pfa... 31 0.28
At4g08930.1 68417.m01470 thioredoxin-related contains weak simil... 31 0.37
At3g02730.1 68416.m00265 thioredoxin, putative similar to SP|P29... 31 0.37
At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29... 30 0.49
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 29 0.86
At3g06730.1 68416.m00798 thioredoxin family protein contains Pfa... 29 0.86
At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-... 29 1.5
At4g26160.1 68417.m03765 thioredoxin family protein low similari... 28 2.0
At1g11530.1 68414.m01324 thioredoxin family protein similar to t... 28 2.0
At1g43560.1 68414.m05000 thioredoxin family protein contains Pfa... 28 2.6
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 27 3.5
At1g03680.1 68414.m00347 thioredoxin M-type 1, chloroplast (TRX-... 27 3.5
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 27 4.6
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 27 4.6
At4g03520.1 68417.m00480 thioredoxin M-type 2, chloroplast (TRX-... 27 6.1
At4g15740.1 68417.m02396 C2 domain-containing protein similar to... 26 8.0
At3g06170.1 68416.m00709 TMS membrane family protein / tumour di... 26 8.0
>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
similar to protein disulfide isomerase precursor
GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
PF00085 Thioredoxins
Length = 508
Score = 89.8 bits (213), Expect = 6e-19
Identities = 42/88 (47%), Positives = 65/88 (73%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQE--QDLAESYGVRGYPTLKFFRNG--SPIDYSG 169
APEY KAA++L+ P+ LAK+DA++E ++ A Y ++G+PTLK RNG S DY+G
Sbjct: 65 APEYEKAASELSSHNPPLALAKIDASEEANKEFANEYKIQGFPTLKILRNGGKSVQDYNG 124
Query: 170 GRQADDIISWLKKKTGPPAVEVTSAEQA 253
R+A+ I+++LKK++GP +VE+ SA+ A
Sbjct: 125 PREAEGIVTYLKKQSGPASVEIKSADSA 152
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKF-FRNGSPIDYSGGRQ 178
AP + A + S I +AK+DAT ++++ V+G+PT+ F +G+ + Y G R
Sbjct: 409 APILDEVALSFQNDPSVI-IAKLDATANDIPSDTFDVKGFPTIYFRSASGNVVVYEGDRT 467
Query: 179 ADDIISWLKKKT 214
+D I++++K +
Sbjct: 468 KEDFINFVEKNS 479
>At5g60640.2 68418.m07611 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 536
Score = 88.6 bits (210), Expect = 1e-18
Identities = 41/85 (48%), Positives = 60/85 (70%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
APEYA AAT+L E+ + LAK+DAT+E +LA+ Y V+G+PTL FF +G Y+GGR
Sbjct: 139 APEYAAAATELKEDG--VVLAKIDATEENELAQEYRVQGFPTLLFFVDGEHKPYTGGRTK 196
Query: 182 DDIISWLKKKTGPPAVEVTSAEQAK 256
+ I++W+KKK GP +T+ + A+
Sbjct: 197 ETIVTWVKKKIGPGVYNLTTLDDAE 221
>At5g60640.1 68418.m07610 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 597
Score = 88.6 bits (210), Expect = 1e-18
Identities = 41/85 (48%), Positives = 60/85 (70%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
APEYA AAT+L E+ + LAK+DAT+E +LA+ Y V+G+PTL FF +G Y+GGR
Sbjct: 139 APEYAAAATELKEDG--VVLAKIDATEENELAQEYRVQGFPTLLFFVDGEHKPYTGGRTK 196
Query: 182 DDIISWLKKKTGPPAVEVTSAEQAK 256
+ I++W+KKK GP +T+ + A+
Sbjct: 197 ETIVTWVKKKIGPGVYNLTTLDDAE 221
>At1g21750.2 68414.m02723 protein disulfide isomerase, putative
similar to SP|P29828 Protein disulfide isomerase
precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
contains non-consensus GA donor splice site at intron 9
Length = 487
Score = 86.2 bits (204), Expect = 7e-18
Identities = 40/88 (45%), Positives = 63/88 (71%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQE--QDLAESYGVRGYPTLKFFRNGSPI--DYSG 169
APEY KAA+ L+ P+ LAK+DA++E ++ A Y V+G+PT+K FRNG +Y+G
Sbjct: 66 APEYEKAASALSSNVPPVVLAKIDASEETNREFATQYEVQGFPTIKIFRNGGKAVQEYNG 125
Query: 170 GRQADDIISWLKKKTGPPAVEVTSAEQA 253
R+A+ I+++LKK++GP + E+ SA+ A
Sbjct: 126 PREAEGIVTYLKKQSGPASAEIKSADDA 153
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 38 EEESPIKLAKVDATQEQDLAESYGVRGYPTLKF-FRNGSPIDYSGGRQADDIISWLK 205
+ +S + +AK+DAT +++ V+G+PT+ F +G+ + Y G RQ + + +++
Sbjct: 422 QSDSSVVIAKLDATANDFPKDTFDVKGFPTIYFKSASGNVVVYEGDRQRESLYLFIR 478
>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
similar to SP|P29828 Protein disulfide isomerase
precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
contains non-consensus GA donor splice site at intron 9
Length = 501
Score = 86.2 bits (204), Expect = 7e-18
Identities = 40/88 (45%), Positives = 63/88 (71%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQE--QDLAESYGVRGYPTLKFFRNGSPI--DYSG 169
APEY KAA+ L+ P+ LAK+DA++E ++ A Y V+G+PT+K FRNG +Y+G
Sbjct: 66 APEYEKAASALSSNVPPVVLAKIDASEETNREFATQYEVQGFPTIKIFRNGGKAVQEYNG 125
Query: 170 GRQADDIISWLKKKTGPPAVEVTSAEQA 253
R+A+ I+++LKK++GP + E+ SA+ A
Sbjct: 126 PREAEGIVTYLKKQSGPASAEIKSADDA 153
Score = 46.0 bits (104), Expect = 9e-06
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Frame = +2
Query: 38 EEESPIKLAKVDATQEQDLAESYGVRGYPTLKF-FRNGSPIDYSGGRQADDIISWLKKK- 211
+ +S + +AK+DAT +++ V+G+PT+ F +G+ + Y G R +D IS++ K
Sbjct: 422 QSDSSVVIAKLDATANDFPKDTFDVKGFPTIYFKSASGNVVVYEGDRTKEDFISFVDKNK 481
Query: 212 --TGPPAVEVTSAEQAKN 259
G P E + E+ K+
Sbjct: 482 DTVGEPKKEEETTEEVKD 499
>At1g52260.1 68414.m05897 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 537
Score = 78.6 bits (185), Expect = 1e-15
Identities = 32/83 (38%), Positives = 54/83 (65%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
P +A+AAT L E S + +AK+D + +A ++G+PTL F NG+ + Y+GG A+
Sbjct: 114 PRFAEAATALKEIGSSVLMAKIDGDRYSKIASELEIKGFPTLLLFVNGTSLTYNGGSSAE 173
Query: 185 DIISWLKKKTGPPAVEVTSAEQA 253
DI+ W++KKTG P + + + ++A
Sbjct: 174 DIVIWVQKKTGAPIITLNTVDEA 196
>At3g54960.1 68416.m06094 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 579
Score = 73.7 bits (173), Expect = 4e-14
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS-PIDYSGGRQA 181
PEYA AAT+L + LAK+DAT+E DLA+ Y ++G+PT+ F +G Y G R
Sbjct: 136 PEYAAAATEL---KGLAALAKIDATEEGDLAQKYEIQGFPTVFLFVDGEMRKTYEGERTK 192
Query: 182 DDIISWLKKKTGPPAVEVTSAEQAK 256
D I++WLKKK P +T+ E+A+
Sbjct: 193 DGIVTWLKKKASPSIHNITTKEEAE 217
>At3g16110.1 68416.m02035 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 534
Score = 70.5 bits (165), Expect = 4e-13
Identities = 29/83 (34%), Positives = 53/83 (63%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
P +A+AAT L E S + +AK+D + +A ++G+PTL F NG+ Y+GG ++
Sbjct: 112 PRFAEAATDLKEIGSSVLMAKIDGERYSKVASQLEIKGFPTLLLFVNGTSQSYTGGFSSE 171
Query: 185 DIISWLKKKTGPPAVEVTSAEQA 253
+I+ W++KKTG +++ + ++A
Sbjct: 172 EIVIWVQKKTGASTIKLDTVDEA 194
>At2g47470.2 68415.m05924 thioredoxin family protein similar to
protein disulfide isomerase [Dictyostelium discoideum]
GI:2627440; contains Pfam profile: PF00085 Thioredoxin
Length = 266
Score = 68.1 bits (159), Expect = 2e-12
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF--RNGSPIDYSGGR 175
AP Y K AT +EE + +A +DA + L E YGV G+PTLKFF N + DY GGR
Sbjct: 178 APTYEKVATVFKQEEGVV-IANLDADAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGR 236
Query: 176 QADDIISWLKKKTG 217
DD +S++ +K+G
Sbjct: 237 DLDDFVSFINEKSG 250
Score = 55.6 bits (128), Expect = 1e-08
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS--PIDYSGGR 175
APEY K + +S + +AKVD +++ + YGV GYPT+++F GS P Y G R
Sbjct: 59 APEYEKLGASFKKAKS-VLIAKVDCDEQKSVCTKYGVSGYPTIQWFPKGSLEPQKYEGPR 117
Query: 176 QADDIISWLKKKTG 217
A+ + ++ K+ G
Sbjct: 118 NAEALAEYVNKEGG 131
>At2g47470.1 68415.m05925 thioredoxin family protein similar to
protein disulfide isomerase [Dictyostelium discoideum]
GI:2627440; contains Pfam profile: PF00085 Thioredoxin
Length = 361
Score = 68.1 bits (159), Expect = 2e-12
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF--RNGSPIDYSGGR 175
AP Y K AT +EE + +A +DA + L E YGV G+PTLKFF N + DY GGR
Sbjct: 178 APTYEKVATVFKQEEGVV-IANLDADAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGR 236
Query: 176 QADDIISWLKKKTG 217
DD +S++ +K+G
Sbjct: 237 DLDDFVSFINEKSG 250
Score = 55.6 bits (128), Expect = 1e-08
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS--PIDYSGGR 175
APEY K + +S + +AKVD +++ + YGV GYPT+++F GS P Y G R
Sbjct: 59 APEYEKLGASFKKAKS-VLIAKVDCDEQKSVCTKYGVSGYPTIQWFPKGSLEPQKYEGPR 117
Query: 176 QADDIISWLKKKTG 217
A+ + ++ K+ G
Sbjct: 118 NAEALAEYVNKEGG 131
>At1g35620.1 68414.m04425 thioredoxin family protein similar to
SP|Q43116 Protein disulfide isomerase precursor (PDI)
(EC 5.3.4.1) {Ricinus communis}; contains Pfam profile
PF00085: Thioredoxin
Length = 440
Score = 56.8 bits (131), Expect = 5e-09
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
PE AA LA+ + PI +AK++A + LA + +PTL + +G P++Y G R+AD
Sbjct: 69 PELDAAAPILAKLKQPIVIAKLNADKYSRLARKIEIDAFPTLMLYNHGVPMEYYGPRKAD 128
Query: 185 DIISWLKKKTGPPAVEVTSAEQAK 256
++ +LKK P + S K
Sbjct: 129 LLVRYLKKFVAPDVAVLESDSTVK 152
>At2g32920.1 68415.m04036 thioredoxin family protein similar to
SP|Q15084 Protein disulfide isomerase A6 precursor (EC
5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085:
Thioredoxin
Length = 440
Score = 49.6 bits (113), Expect = 8e-07
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +2
Query: 59 LAKVDATQEQDLAESYGVRGYPTLKFFRNG-SPIDYSGGRQADDIISWLKKK 211
+A +DA Q A+ YG++G+PT+K F G +PIDY G R A I ++ K+
Sbjct: 83 VAAIDADAHQSAAQDYGIKGFPTIKVFVPGKAPIDYQGARDAKSIANFAYKQ 134
Score = 41.9 bits (94), Expect = 2e-04
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF--RNGSPIDYSGGR 175
APE+ +AA L + +KL V+ EQ + + V+G+PT+ F SP Y G R
Sbjct: 199 APEWKRAAKNL---QGKVKLGHVNCDVEQSIMSRFKVQGFPTILVFGPDKSSPYPYEGAR 255
Query: 176 QADDIISWLKK--KTGPPAVEVT 238
A I S+ + ++ VEVT
Sbjct: 256 SASAIESFASELVESSAGPVEVT 278
>At1g04980.1 68414.m00497 thioredoxin family protein similar to
SP|Q63081 Protein disulfide isomerase A6 precursor (EC
5.3.4.1) {Rattus norvegicus}; contains Pfam profile
PF00085: Thioredoxin
Length = 443
Score = 48.0 bits (109), Expect = 2e-06
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS-PIDYSGGRQA 181
P + K A+ L + +A +DA + +++ YGVRG+PT+K F G PIDY G R A
Sbjct: 66 PTWEKVASTL---KGIATVAAIDADAHKSVSQDYGVRGFPTIKVFVPGKPPIDYQGARDA 122
Query: 182 DDIISWLKKK 211
I + K+
Sbjct: 123 KSISQFAIKQ 132
Score = 46.0 bits (104), Expect = 9e-06
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRN--GSPIDYSGGR 175
APE+ KAA L + +KL V+ EQ + + V+G+PT+ F + SP+ Y G R
Sbjct: 200 APEWKKAANNL---KGKVKLGHVNCDAEQSIKSRFKVQGFPTILVFGSDKSSPVPYEGAR 256
Query: 176 QADDIISW----LKKKTGPPAV-EVTSAE 247
A I S+ L+ GP V E+T +
Sbjct: 257 SASAIESFALEQLESNAGPAEVTELTGPD 285
>At4g27080.1 68417.m03893 thioredoxin family protein contains Pfam
PF00085: Thioredoxin
Length = 480
Score = 46.4 bits (105), Expect = 7e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Frame = +2
Query: 5 PEYAKAATKLAEEESP-----IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI 157
P + KAA ++ E P + LAKVD TQE DL ++GYP+++ FR GS +
Sbjct: 178 PSWEKAAKQIKERYDPEMDGRVILAKVDCTQEGDLCRRNHIQGYPSIRIFRKGSDL 233
>At1g50950.1 68414.m05728 thioredoxin-related contains weak hit to
Pfam PF00085: Thioredoxin; contains 2 predicted
transmembrane domains
Length = 484
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Frame = +2
Query: 5 PEYAKAATKLAEEESP-----IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI---- 157
P + KA+ E +P + L VD T+E L +S ++GYP+++ FR GS +
Sbjct: 179 PSWVKASQITRERYNPGTDDRVLLGSVDCTEEPTLCKSNHIQGYPSIRIFRRGSGLREDH 238
Query: 158 ------DYSGGRQADDIISWLKKKTGP 220
Y G R D ++ +++ P
Sbjct: 239 GNHEHESYYGDRDTDSLVKMVEELLKP 265
>At3g20560.1 68416.m02603 thioredoxin family protein contains Pfam
profile PF00085: Thioredoxin
Length = 483
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Frame = +2
Query: 5 PEYAKAATKLAEEESP-----IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI---- 157
P + KAA + + P + L VD T+E L + ++GYP+++ FR GS +
Sbjct: 178 PSWEKAANIIKQRYDPEADGRVLLGNVDCTEEPALCKRNHIQGYPSIRIFRKGSDLREDH 237
Query: 158 ------DYSGGRQADDIISWLKKKTGP 220
Y G R D I+ ++ P
Sbjct: 238 GHHEHESYYGDRDTDSIVKMVEGLVAP 264
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 65 KVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTG 217
KVD + Q +A+ +GV PT F + G +D G +D+ + + K TG
Sbjct: 65 KVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTG 115
>At4g04950.1 68417.m00719 thioredoxin family protein similar to
PKCq-interacting protein PICOT from [Mus musculus]
GI:6840949, [Rattus norvegicus] GI:6840951; contains
Pfam profile PF00085: Thioredoxin
Length = 488
Score = 35.9 bits (79), Expect = 0.010
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +2
Query: 65 KVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEVTSA 244
+V+A + +++E+Y V P FF++G +D G AD S L K G A TSA
Sbjct: 57 RVEAEEHPEISEAYSVAAVPYFVFFKDGKTVDTLEG--ADP--SSLANKVGKVAGSSTSA 112
Query: 245 EQA 253
E A
Sbjct: 113 EPA 115
>At1g34780.1 68414.m04329 protein disulfide isomerase-related
contains weak similarity to Pfam:P08003 protein
disulfide isomerase A4 precursor (Protein ERp-72, ERp72)
[Mus musculus]
Length = 310
Score = 35.9 bits (79), Expect = 0.010
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 104 YGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEVTSAEQA 253
YGV G+PTL + Y G R D ++++ TG ++ TS E++
Sbjct: 131 YGVHGFPTLLLLNSTMRARYRGTRMLDSLVAFYSDVTGIETLDKTSLERS 180
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 35.1 bits (77), Expect = 0.017
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 26 TKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
+ LA + S + KVD + D+A S+ + PT F R+G +D
Sbjct: 315 SNLATQHSRVVFLKVDIDKANDVAASWNISSVPTFCFIRDGKEVD 359
>At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL)
identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5)
{Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA
for thioredoxin GI:992965
Length = 118
Score = 35.1 bits (77), Expect = 0.017
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
AP +A+ A K + K+D + Q +A+ + V PT F + G+ ID G
Sbjct: 46 APVFAEMAKKFTN----VVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAK 101
Query: 182 DDIISWLKKKTG 217
D+I L K G
Sbjct: 102 DEINEKLMKHGG 113
>At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identical
to SP|P29448 Thioredoxin H-type 1 (TRX-H-1) {Arabidopsis
thaliana}
Length = 114
Score = 33.9 bits (74), Expect = 0.040
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
AP +A A KL + KVD + + +A + ++ PT F + G +D G +
Sbjct: 47 APFFADLAKKLPN----VLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKK 102
Query: 182 DDIISWLKK 208
D++ S + K
Sbjct: 103 DELQSTIAK 111
>At1g76760.1 68414.m08933 thioredoxin family protein similar to
thioredoxin CH2, M-type, chloroplast precursor GB:P23400
SP|P23400 [Chlamydomonas reinhardtii]; contains Pfam
profile: PF00085 Thioredoxin
Length = 172
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 53 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID-YSGGRQADDII 193
I++ K+D + +A Y + PT F++G P D + G A +I
Sbjct: 114 IQVVKIDTEKYPSIANKYKIEALPTFILFKDGEPCDRFEGALTAKQLI 161
>At1g07960.3 68414.m00867 thioredoxin family protein low similarity
to protein disulfide isomerase 4 [Giardia intestinalis]
GI:13489047; contains Pfam profile PF00085: Thioredoxin
Length = 146
Score = 32.3 bits (70), Expect = 0.12
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 29 KLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID-YSGGRQADDIISWLK 205
K E + I++ +VD + + + YPT F NG + Y G R + + +++
Sbjct: 70 KAMEGDDEIEVGEVDCGTSRAVCTKVEIHSYPTFMLFYNGEEVSKYKGKRDVESLKAFVV 129
Query: 206 KKT 214
++T
Sbjct: 130 EET 132
>At1g07960.2 68414.m00866 thioredoxin family protein low similarity
to protein disulfide isomerase 4 [Giardia intestinalis]
GI:13489047; contains Pfam profile PF00085: Thioredoxin
Length = 146
Score = 32.3 bits (70), Expect = 0.12
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 29 KLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID-YSGGRQADDIISWLK 205
K E + I++ +VD + + + YPT F NG + Y G R + + +++
Sbjct: 70 KAMEGDDEIEVGEVDCGTSRAVCTKVEIHSYPTFMLFYNGEEVSKYKGKRDVESLKAFVV 129
Query: 206 KKT 214
++T
Sbjct: 130 EET 132
>At1g07960.1 68414.m00865 thioredoxin family protein low similarity
to protein disulfide isomerase 4 [Giardia intestinalis]
GI:13489047; contains Pfam profile PF00085: Thioredoxin
Length = 146
Score = 32.3 bits (70), Expect = 0.12
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 29 KLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID-YSGGRQADDIISWLK 205
K E + I++ +VD + + + YPT F NG + Y G R + + +++
Sbjct: 70 KAMEGDDEIEVGEVDCGTSRAVCTKVEIHSYPTFMLFYNGEEVSKYKGKRDVESLKAFVV 129
Query: 206 KKT 214
++T
Sbjct: 130 EET 132
>At3g08710.1 68416.m01012 thioredoxin family protein similar to
thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
{Nicotiana tabacum}; contains Pfam profile: PF00085
Thioredoxin
Length = 140
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 29 KLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI 157
+L+E+ S + VD + D + S+ ++ PT F +NG I
Sbjct: 69 ELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQI 111
>At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1)
identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3)
{Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA
for thioredoxin GI:992961
Length = 118
Score = 31.1 bits (67), Expect = 0.28
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 32 LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 208
LA++ + KVD + +AE + V+ PT F + G + G ++II+ L+K
Sbjct: 52 LAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEK 110
>At4g32580.1 68417.m04638 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 160
Score = 31.1 bits (67), Expect = 0.28
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 65 KVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEVTSA 244
+V+A + +++E+Y V P FF++G +D G AD S L K G A +T A
Sbjct: 57 RVEAEEHPEISEAYSVALVPYFVFFKDGKTVDTLEG--ADP--SSLANKVGKVAGSITPA 112
>At4g08930.1 68417.m01470 thioredoxin-related contains weak
similarity to Swiss-Prot:Q39239 thioredoxin H-type 4
(TRX-H-4). [Mouse-ear cress]
Length = 295
Score = 30.7 bits (66), Expect = 0.37
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 104 YGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTG 217
YGV G+PT+ + + Y G R D ++++ TG
Sbjct: 124 YGVHGFPTIILMNSTMLVVYRGSRTLDSLVAFYTDVTG 161
>At3g02730.1 68416.m00265 thioredoxin, putative similar to SP|P29450
Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum
sativum}; contains Pfam profile: PF00085 Thioredoxin
Length = 178
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQE-QDLAESYGVRGYPTLKFFRNGSPIDYSGGRQ 178
AP+Y KA L+E+ + K+D + + LA+ G+R PT K ++ + G +
Sbjct: 106 APKY-KA---LSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAK 161
Query: 179 ADDIIS 196
DD+++
Sbjct: 162 YDDLVA 167
>At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29450
Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum
sativum}; contains Pfam profile: PF00085 Thioredoxin
Length = 185
Score = 30.3 bits (65), Expect = 0.49
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 APEYAKAATKLAEEESPIKLAKVDATQE-QDLAESYGVRGYPTLKFFRNGSPIDYSGGRQ 178
AP+Y + L+E+ + K+D Q+ + LA+ G+R PT K ++ + G +
Sbjct: 116 APKYKE----LSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAK 171
Query: 179 ADDIIS 196
+D+++
Sbjct: 172 YEDLLA 177
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 32 LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDI 190
+A++ + + K+D + D+A+ + V PT + G I+ G + D++
Sbjct: 72 MADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDEL 124
>At3g06730.1 68416.m00798 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 183
Score = 29.5 bits (63), Expect = 0.86
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 38 EEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSP 154
E ES + KVD E + A VRG PTL FF + P
Sbjct: 122 EYESNAIIVKVDTDDEYEFARDMQVRGLPTL-FFISPDP 159
>At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-M4)
nearly identical to SP|Q9SEU6 Thioredoxin M-type 4,
chloroplast precursor (TRX-M4) {Arabidopsis thaliana}
Length = 193
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 56 KLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
K K++ + + A YG+R PT+ F+ G D
Sbjct: 138 KFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKD 172
>At4g26160.1 68417.m03765 thioredoxin family protein low similarity
to thioredoxin [Ictalurus punctatus] GI:9837585;
contains Pfam profile: PF00085 Thioredoxin
Length = 221
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 197 WLKKKTGPPAVEVTSAEQAKN 259
W ++K GP +++TSAEQ N
Sbjct: 86 WWERKAGPNMIDITSAEQFLN 106
>At1g11530.1 68414.m01324 thioredoxin family protein similar to
thioredoxin H-type from Arabidopsis thaliana SP|P29448,
Nicotiana tabacum SP|Q07090; contains Pfam profile:
PF00085 Thioredoxin
Length = 118
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 68 VDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDI 190
VD + +++A V+ PT F ++G+ +D G D+I
Sbjct: 61 VDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEI 101
>At1g43560.1 68414.m05000 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; similar to thioredoxin
GI:142153 from [Synechococcus PCC6301]
Length = 167
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 53 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID-YSGGRQADDII 193
I + K+D + LA Y + PT F++G D + G A+ ++
Sbjct: 109 IAVVKIDTEKYPSLANKYQIEALPTFILFKDGKLWDRFEGALPANQLV 156
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 68 VDATQEQDLAESYGVRGYPTLKFFRNGSPI 157
VD + LA++ +R PT K ++NG +
Sbjct: 642 VDVEESMALAKAESIRKVPTFKMYKNGDKV 671
>At1g03680.1 68414.m00347 thioredoxin M-type 1, chloroplast (TRX-M1)
nearly identical to SP|O48737 Thioredoxin M-type 1,
chloroplast precursor (TRX-M1) {Arabidopsis thaliana};
similar to ESTs gb|T13714, gb|H76398, gb|N37762,
gb|AA042639, gb|T21104, emb|Z30901
Length = 179
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 56 KLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIIS 196
K K++ + YGVR PT+ F NG D G + D ++
Sbjct: 126 KFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLA 172
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 252 ACSADVTSTAGGPVFFFSQLMMSSA*RPP 166
AC +S+ GGP +++ S + RPP
Sbjct: 65 ACPPPPSSSGGGPYYYYPPASQSGSYRPP 93
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 53 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI 157
I KVD + + + VR PT+K ++NGS +
Sbjct: 645 IHFLKVDIDKCPSIGNAENVRVVPTVKIYKNGSRV 679
>At4g03520.1 68417.m00480 thioredoxin M-type 2, chloroplast (TRX-M2)
nearly identical to SP|Q9SEU8 Thioredoxin M-type 2,
chloroplast precursor (TRX-M2) {Arabidopsis thaliana}
Length = 186
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 53 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
IK K++ + + YGVR PT+ F G D
Sbjct: 131 IKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKD 166
>At4g15740.1 68417.m02396 C2 domain-containing protein similar to
cold-regulated gene SRC2 [Glycine max] GI:2055230;
contains Pfam profile PF00168: C2 domain
Length = 468
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 68 VDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGG 172
+DAT + D+ + G T + +PIDY GG
Sbjct: 54 IDATDKMDVYAVVSINGDTTQQKQAAKTPIDYDGG 88
>At3g06170.1 68416.m00709 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 409
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 140 RNGSPIDYSGGRQADDIISWLKKKTGPPAVE 232
R + I Y G A ++SW+ ++TG P +E
Sbjct: 26 RKSARIAYCGLFGASLVVSWILRETGAPLLE 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,401,481
Number of Sequences: 28952
Number of extensions: 127022
Number of successful extensions: 395
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -