Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0015.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0549 - 9395978-9396428,9396517-9396863                           30   0.99 
03_02_0548 - 9392048-9392501,9392596-9392939                           29   1.7  
02_05_0029 - 25194827-25195095,25195129-25197970                       29   1.7  
12_02_0454 + 19199063-19200757,19202201-19202287                       27   5.3  
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152...    27   9.2  

>03_02_0549 - 9395978-9396428,9396517-9396863
          Length = 265

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 301 CPVQLHLXIFYTSYYIRYFCLPSYFPISNSVT 396
           C  Q    I Y+S  +RY   P YFP++ S T
Sbjct: 219 CGAQQGCRILYSSCMVRYEIYPFYFPLATSST 250


>03_02_0548 - 9392048-9392501,9392596-9392939
          Length = 265

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 301 CPVQLHLXIFYTSYYIRYFCLPSYFPISNSVTKSDTQHASF 423
           C  Q    I Y+S  +RY   P YFP++ S   + T    +
Sbjct: 218 CGAQQGCQINYSSCRVRYEIYPFYFPLATSARSATTDMTKY 258


>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 148 SVLSNSGPVWS*G*AYIIAPSRFWSPLSSGVPSWIPKVTCXLHLFVLQRS 297
           S LS S P W    A +      W+ LS  +P+WI  +    HLF L  S
Sbjct: 452 SHLSGSVPSWVANFAQLKVLDLSWNKLSGNIPAWIGNLE---HLFYLDLS 498


>12_02_0454 + 19199063-19200757,19202201-19202287
          Length = 593

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 177 PYWTRVAEDRAQWRELEEAYATRHAELRDIL*EITNKKXKM*ISW 43
           P W RV ED A   E +E   TR     ++     NKK K    W
Sbjct: 281 PEWARVDEDEAAVFEDDEEEETRAKRKEELYCVACNKKFKSDKQW 325


>05_05_0339 +
           24213179-24213821,24214402-24214623,24215035-24215282,
           24215385-24215524,24215579-24215753
          Length = 475

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 186 LGVYHRSISFLVAPVFWCPLLDT 254
           L V H  +  LVAPV  CP+L T
Sbjct: 388 LSVTHPEVKKLVAPVELCPILKT 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,298,597
Number of Sequences: 37544
Number of extensions: 263718
Number of successful extensions: 726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)