Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0015.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    36   0.018
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    30   0.68 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    30   0.68 
Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    29   1.2  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    27   4.8  
AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z83127-2|CAB05632.2|  252|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z48367-1|CAA88323.1|  301|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    27   8.3  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
 Frame = -3

Query: 438 TQRAMERSMLSIRLSDR----IRNWEIRRKTKVPDIITRIENX*MELDRTYATLQNKQVE 271
           T  A+ER ++ + L+++    I   E+R K+K+ D +  I+   +      A   + +  
Sbjct: 79  THAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGWAGHVARRTDGRWT 138

Query: 270 XTGYFRYPRGDTRRQGRPKTRWSDDIRL---------TLGPYWTRVAEDRAQWRELEEA 121
                  PR + R  GRP  RW+D +R           +   W+  A+DR  W+ +  A
Sbjct: 139 TLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVIRA 197


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -3

Query: 249  PRGDTRRQGRPKTRWSDDIRLTLGPY---------WTRVAEDRAQW 139
            P G  R  GRP  RW+D +R  +            W+ +A+DR QW
Sbjct: 1010 PYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 1055


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -3

Query: 249 PRGDTRRQGRPKTRWSDDIRLTLGPY---------WTRVAEDRAQW 139
           P G  R  GRP  RW+D +R  +            W+ +A+DR QW
Sbjct: 749 PYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 794


>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = -3

Query: 408 SIRLSDRIRNWEIRRKTKVPDIITRIENX*MELDRTYATLQNKQVEXTGYFRYPRGDTRR 229
           SIR S    N E    TK  + +  I N   + ++  A  + ++       R     TR+
Sbjct: 244 SIRESMVSANTEFSEATK--EEMNEINNILQDAEQRVAETKKQEEHDAAELRTLMKSTRQ 301

Query: 228 QGRPKTRWSDDIRLTLGPYWTR 163
           +     +W+D I   +G +W R
Sbjct: 302 KSLDAIQWNDKITKEIGGFWDR 323


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -3

Query: 249 PRGDTRRQGRPKTRWSDDIRLTLGPY---------WTRVAEDRAQW 139
           P G  R  GRP  RW+D +R  +            W+ +A+DR +W
Sbjct: 835 PYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEW 880


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -3

Query: 249 PRGDTRRQGRPKTRWSDDIRLTLGPY---------WTRVAEDRAQW 139
           P G  R  GRP  RW+D +R  +            W+ +A+DR +W
Sbjct: 361 PYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEW 406


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
           protein T05C3.2 protein.
          Length = 1733

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 319 LXIFYTSYYIRYFCLPSYFPISNSVTKSDTQHASFHCSL 435
           + + Y + YIR FC   Y  I++ V  +  +HA F   L
Sbjct: 382 IDVQYHAEYIRQFCTDFYKSITSMVDNAMEKHARFRDQL 420


>AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical
           protein Y18H1A.7 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 292 VAKQTSGVXRLL*VSKRGHQKTGATKNEMER*YTP-NPRTILDQSC*GPSPMERAGG 125
           +AK T  + +L+ +SK   +K   T N  E    P   +T+L+    G SP  ++ G
Sbjct: 156 IAKSTPKIRKLVKISKICSEKLPKTANSTENQDAPATEQTMLNNRAAGSSPSRKSPG 212


>Z83127-2|CAB05632.2|  252|Caenorhabditis elegans Hypothetical
           protein T23F6.2 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 109 PRGIGLLQLSPLGSVLSNSGPV 174
           PRG+GLLQL P G     SGP+
Sbjct: 26  PRGLGLLQL-PTGMSDERSGPI 46


>Z48367-1|CAA88323.1|  301|Caenorhabditis elegans Hypothetical
           protein C33B4.2 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 109 PRGIGLLQLSPLGSVLSNSGP 171
           PRG+GLLQL P G     SGP
Sbjct: 73  PRGLGLLQL-PTGMTDERSGP 92


>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 161 LLRTEPNGESWRRPMPRG 108
           ++ T P+  +WR+P+PRG
Sbjct: 29  IVDTPPSDATWRKPVPRG 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,563
Number of Sequences: 27780
Number of extensions: 223815
Number of successful extensions: 533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)