Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0015.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   4.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   6.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.2  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 292 RSICPVQLHLXIFYTSYYIRYFCLPSYFPISNSVTK 399
           RS+CP QL +    TS  ++   +P    ++ +  K
Sbjct: 145 RSVCPPQLLVFDLNTSQLLKQVKIPHDIAVNTTTEK 180


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 3   FFYNNKALYFRTITM 47
           +FYN K  Y  TIT+
Sbjct: 123 YFYNGKHSYVHTITV 137


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 3   FFYNNKALYFRTIT 44
           +FYN K  Y  TIT
Sbjct: 91  YFYNGKHSYLHTIT 104


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 29  FPNYNHEIYIFXFLFVISY 85
           FP Y HEI    F  ++ Y
Sbjct: 195 FPTYTHEITYSLFGMIMMY 213


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 306 CPTPFXDFLYEL 341
           CP P+ D  YE+
Sbjct: 196 CPEPYPDITYEI 207


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +1

Query: 232 SGVPSWIP 255
           SG+P+W+P
Sbjct: 337 SGIPNWVP 344


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 328 FYTSYYIRYFCLPSYFPISNSV 393
           F+T Y +R FC     P   SV
Sbjct: 25  FFTMYLVRAFCRNCIHPTVFSV 46


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 328 FYTSYYIRYFCLPSYFPISNSV 393
           F+T Y +R FC     P   SV
Sbjct: 473 FFTMYLVRAFCRNCIHPTVFSV 494


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +1

Query: 232 SGVPSWIP 255
           SG+P+W+P
Sbjct: 337 SGIPNWVP 344


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 430 SNGKKHVEYQT**QNSKLGNKKEDKSTGYNNSYRK 326
           SN  K+  Y     N+   N   + +  YNN+Y+K
Sbjct: 86  SNNYKYSNY-----NNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 430 SNGKKHVEYQT**QNSKLGNKKEDKSTGYNNSYRK 326
           SN  K+  Y     N+   N   + +  YNN+Y+K
Sbjct: 86  SNNYKYSNY-----NNYNNNYNNNYNNNYNNNYKK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,113
Number of Sequences: 438
Number of extensions: 2956
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)