Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0014.Seq
         (338 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54FH5 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_A3HAB0 Cluster: Putative uncharacterized protein precur...    30   8.8  

>UniRef50_Q54FH5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1666

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 63  YFDTYYFNIKCYYYILLEFSIKLRHYQQNICILH*TDIPIISNKALRGCN 212
           Y+  YY+    YYY    F+  L HY+  +C     DI I  N+     N
Sbjct: 165 YYYYYYYYYYYYYYYYYYFTNLLNHYEATLC-KRLNDISIYQNEEYSNIN 213


>UniRef50_A3HAB0 Cluster: Putative uncharacterized protein
           precursor; n=1; Caldivirga maquilingensis IC-167|Rep:
           Putative uncharacterized protein precursor - Caldivirga
           maquilingensis IC-167
          Length = 539

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -1

Query: 239 RSEDKLISLITSAECLIRDYGNISLMKNTNVLLIMT*FY*KFQQNIIVTFNIEIISIEVL 60
           R  +K+  L+TSA  ++  Y  IS+ K T  ++  + FY       IVT  + +I+  +L
Sbjct: 2   RKYNKVAILLTSASIILFTYSTISMTKFTVNVITQSPFYLYNNTPYIVTIILTLITTIIL 61

Query: 59  RL 54
            L
Sbjct: 62  TL 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,853,425
Number of Sequences: 1657284
Number of extensions: 4179148
Number of successful extensions: 9243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9241
length of database: 575,637,011
effective HSP length: 88
effective length of database: 429,796,019
effective search space used: 10315104456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)