Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0014.Seq
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                       27   5.1  
SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  

>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 39  LTNKVQPQYFDTYYFNIKCYYYILLEFSIKLRHYQ 143
           LTN +Q  YF    + +K Y+ ++ E   K+ H +
Sbjct: 34  LTNILQSPYFKNELYQLKTYHEVVDEIYYKVDHLE 68


>SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 63  YFDTYYFNIKCYYYILLEFSIKLR 134
           Y+  YY+    YYY +LEF  ++R
Sbjct: 13  YYYYYYYYYYYYYYAILEFRGEVR 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,395,916
Number of Sequences: 59808
Number of extensions: 125431
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)