Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0014.Seq
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132859-2|CAB60488.1| 315|Caenorhabditis elegans Hypothetical ... 28 1.5
Z38112-3|CAA86230.2| 333|Caenorhabditis elegans Hypothetical pr... 28 2.0
AF026211-6|AAB71290.1| 277|Caenorhabditis elegans Hypothetical ... 27 4.5
Z81508-2|CAB04143.1| 323|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z81454-1|CAB03803.1| 320|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z77657-5|CAB01145.2| 381|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical pr... 26 7.9
U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein. 26 7.9
L39893-1|AAA62311.1| 735|Caenorhabditis elegans cleavage stimul... 26 7.9
AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical ... 26 7.9
>AL132859-2|CAB60488.1| 315|Caenorhabditis elegans Hypothetical
protein Y39C12A.3 protein.
Length = 315
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 96 YYYILLEFSIKLRHYQQNICILH 164
YY L +I+++HY+ NI ILH
Sbjct: 34 YYIFNLYVTIRVKHYKNNIKILH 56
>Z38112-3|CAA86230.2| 333|Caenorhabditis elegans Hypothetical
protein E03A3.5 protein.
Length = 333
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 9 MCIFGVQCVKLTNKVQPQYFDTYYFNIKCYYYI 107
+C G+Q + PQY + YY + C YYI
Sbjct: 104 LCNGGIQNGTFGSIQSPQYPNQYYNKLMCLYYI 136
>AF026211-6|AAB71290.1| 277|Caenorhabditis elegans Hypothetical
protein T13B5.6 protein.
Length = 277
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -3
Query: 201 GVPYSRLWEYQFN 163
G+PYS+++EY FN
Sbjct: 249 GIPYSKVYEYDFN 261
>Z81508-2|CAB04143.1| 323|Caenorhabditis elegans Hypothetical
protein F20E11.4 protein.
Length = 323
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 3 DTMCIFGVQCVKLTNKVQPQYFDTYYFNIKCYYYI 107
DT+ G+ + L + + + YF IKCY YI
Sbjct: 189 DTISFVGIGIMSLI--LSSSFSNVIYFGIKCYNYI 221
>Z81454-1|CAB03803.1| 320|Caenorhabditis elegans Hypothetical
protein B0391.3 protein.
Length = 320
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 3 DTMCIFGVQCVKLTNKVQPQYFDTYYFNIKCYYYI 107
D M GV + L V + YF IKCY YI
Sbjct: 174 DAMSFMGVAIMFLI--VGSSFVAVVYFGIKCYQYI 206
>Z77657-5|CAB01145.2| 381|Caenorhabditis elegans Hypothetical
protein F08H9.8 protein.
Length = 381
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 3 DTMCIFGVQCVKLTNKVQPQYFDTYYFNIKCYYYI 107
D I+G Q + N P Y YY N+ C Y I
Sbjct: 156 DPKKIYGGQYTRSGNITSPGYPVQYYNNLDCLYTI 190
>Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical
protein F28C6.6 protein.
Length = 735
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 245 PPRSEDKLISLITSAECLIRDYGNISLMKN-TNVLLIMT*FY*KFQQNII 99
PP+S L+SL+ C I + N+ L+ N N + + Y K + N++
Sbjct: 614 PPQSVAHLMSLLPPPTCFIGPFINVELLCNMINNMQLPNVSYPKSEDNML 663
>U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein.
Length = 730
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 245 PPRSEDKLISLITSAECLIRDYGNISLMKN-TNVLLIMT*FY*KFQQNII 99
PP+S L+SL+ C I + N+ L+ N N + + Y K + N++
Sbjct: 609 PPQSVAHLMSLLPPPTCFIGPFINVELLCNMINNMQLPNVSYPKSEDNML 658
>L39893-1|AAA62311.1| 735|Caenorhabditis elegans cleavage
stimulation factor protein.
Length = 735
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 245 PPRSEDKLISLITSAECLIRDYGNISLMKN-TNVLLIMT*FY*KFQQNII 99
PP+S L+SL+ C I + N+ L+ N N + + Y K + N++
Sbjct: 614 PPQSVAHLMSLLPPPTCFIGPFINVELLCNMINNMQLPNVSYPKSEDNML 663
>AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical
protein Y39C12A.6 protein.
Length = 346
Score = 25.8 bits (54), Expect = 7.9
Identities = 7/23 (30%), Positives = 17/23 (73%)
Frame = +3
Query: 96 YYYILLEFSIKLRHYQQNICILH 164
YY+ L ++++++Y+ N+ I+H
Sbjct: 38 YYFFNLAITVRVKYYKTNLQIIH 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,558,963
Number of Sequences: 27780
Number of extensions: 106686
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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