Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0013.Seq
         (269 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051520-1|AAK92944.1|  536|Drosophila melanogaster GH17801p pro...    29   0.67 
AE014134-281|AAF51348.3|  536|Drosophila melanogaster CG17660-PA...    29   0.67 

>AY051520-1|AAK92944.1|  536|Drosophila melanogaster GH17801p
           protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 96  WAAQPTYIISXAVYVLAGLLTLFHAFKKGGRW--SXFWLGTVL 218
           W   P Y+I   VYV+ G++ LF +F +        FW+G V+
Sbjct: 199 WPFLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVI 241


>AE014134-281|AAF51348.3|  536|Drosophila melanogaster CG17660-PA
           protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 96  WAAQPTYIISXAVYVLAGLLTLFHAFKKGGRW--SXFWLGTVL 218
           W   P Y+I   VYV+ G++ LF +F +        FW+G V+
Sbjct: 199 WPFLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVI 241


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,348,084
Number of Sequences: 53049
Number of extensions: 139992
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 24,988,368
effective HSP length: 68
effective length of database: 21,381,036
effective search space used: 449001756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)