Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0013.Seq
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical p...    26   3.2  
AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z54342-7|CAA91149.1|  460|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U88310-1|AAB42340.1|  663|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK899.2 protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/49 (18%), Positives = 24/49 (48%)
 Frame = +3

Query: 84  IKQLWAAQPTYIISXAVYVLAGLLTLFHAFKKGGRWSXFWLGTVLXGIS 230
           +  ++    +++    ++ L   LT  HA++ G R+   W G ++  ++
Sbjct: 45  VSTIYENHTSFLFGEILFFLLAGLTFAHAWRSGTRFVLVWFGILVHALN 93


>Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical
           protein C08H9.4b protein.
          Length = 465

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 146 SQNVNGX-RYYICRLGSPQLLDVIFS 72
           S+NV+   +YYIC+ G P   ++I S
Sbjct: 311 SRNVDEIMKYYICKTGQPSKFNIIIS 336


>AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical
           protein K03H6.1 protein.
          Length = 392

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 87  KQLWAAQPTYIISXAVYVLAGLLTLFHAFK 176
           K  W      ++  +++V  GLLT++H F+
Sbjct: 148 KLYWQRGKMVVVLSSIFVTTGLLTVYHHFE 177


>Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical
           protein ZK938.6 protein.
          Length = 460

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 146 SQNVNGX-RYYICRLGSPQLLDVIFS 72
           S+NV+   +YYIC+ G P   ++I S
Sbjct: 306 SRNVDEIMKYYICKTGQPSKFNIIVS 331


>Z54342-7|CAA91149.1|  460|Caenorhabditis elegans Hypothetical
           protein C08H9.12 protein.
          Length = 460

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 125 RYYICRLGSPQLLDVIFS 72
           +YYIC+ G P   ++I S
Sbjct: 314 KYYICKSGQPSKFNIIVS 331


>U88310-1|AAB42340.1|  663|Caenorhabditis elegans Hypothetical
           protein C24G7.4 protein.
          Length = 663

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 98  GCPTYIYNISXRLRFGWPFNIISC 169
           GC  + YN+  R +   P+  I+C
Sbjct: 365 GCAPFTYNVDGRKKICAPYESITC 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,835,426
Number of Sequences: 27780
Number of extensions: 75892
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)