Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0010.Seq
(409 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q99460 Cluster: 26S proteasome non-ATPase regulatory su... 52 6e-06
UniRef50_UPI0000E46D24 Cluster: PREDICTED: similar to proteasome... 45 7e-04
UniRef50_Q5C1E5 Cluster: SJCHGC06140 protein; n=1; Schistosoma j... 44 9e-04
UniRef50_Q6XJG7 Cluster: 26S proteasome subunit RPN2a; n=19; Mag... 36 0.24
UniRef50_A0CHF2 Cluster: Chromosome undetermined scaffold_180, w... 36 0.31
UniRef50_Q18115 Cluster: 26S proteasome non-ATPase regulatory su... 36 0.42
UniRef50_A7QXR1 Cluster: Chromosome undetermined scaffold_229, w... 35 0.73
UniRef50_A7PF98 Cluster: Chromosome chr11 scaffold_13, whole gen... 34 1.3
UniRef50_Q7VR89 Cluster: Succinyl-CoA synthetase beta chain; n=2... 33 1.7
UniRef50_Q5CSW3 Cluster: Putative uncharacterized protein; n=2; ... 33 2.2
UniRef50_Q54JM5 Cluster: 26S proteasome regulatory subunit S1; n... 33 2.2
UniRef50_Q7R4S0 Cluster: GLP_440_57839_61885; n=1; Giardia lambl... 33 2.9
UniRef50_A6PUP9 Cluster: Putative uncharacterized protein precur... 31 6.8
UniRef50_A7EXI9 Cluster: Putative uncharacterized protein; n=2; ... 31 6.8
UniRef50_A6RM25 Cluster: Putative uncharacterized protein; n=1; ... 31 6.8
UniRef50_UPI0000DC1389 Cluster: nuclear transcription factor, X-... 31 8.9
UniRef50_Q3MCI0 Cluster: Putative uncharacterized protein precur... 31 8.9
UniRef50_Q7QQD3 Cluster: GLP_386_11718_9673; n=1; Giardia lambli... 31 8.9
UniRef50_A2F2R6 Cluster: Proteasome/cyclosome repeat family prot... 31 8.9
UniRef50_O94502 Cluster: Mitochondrial carrier, calcium binding ... 31 8.9
>UniRef50_Q99460 Cluster: 26S proteasome non-ATPase regulatory subunit
1; n=57; Eumetazoa|Rep: 26S proteasome non-ATPase
regulatory subunit 1 - Homo sapiens (Human)
Length = 953
Score = 51.6 bits (118), Expect = 6e-06
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = -3
Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLV 255
F++L NPARVM QLK LT+ E + P K ++IGGI++L T E + LV
Sbjct: 875 FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELV 925
>UniRef50_UPI0000E46D24 Cluster: PREDICTED: similar to proteasome
subunit p112; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to proteasome subunit p112 -
Strongylocentrotus purpuratus
Length = 162
Score = 44.8 bits (101), Expect = 7e-04
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = -3
Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLV 255
FE+L NPARVM QLK L+I + P+K +IGGI+M+ E ++
Sbjct: 83 FEMLGNPARVMSAQLKVLSIPAECRYKPIKSTSIGGILMVKDLKNTEPKMI 133
>UniRef50_Q5C1E5 Cluster: SJCHGC06140 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC06140 protein - Schistosoma
japonicum (Blood fluke)
Length = 380
Score = 44.4 bits (100), Expect = 9e-04
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = -3
Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVML-NHTGEGEQVLVSR-LPHSA 234
F +L+NPARVMR Q + +T+ E S + LK IT GGI+M+ + + +VLV L H
Sbjct: 112 FCLLNNPARVMRAQQRYVTLPETSRYVTLKPITQGGILMVQDKNPQDAEVLVENVLGHGP 171
Query: 233 RRQR 222
+R
Sbjct: 172 TLER 175
>UniRef50_Q6XJG7 Cluster: 26S proteasome subunit RPN2a; n=19;
Magnoliophyta|Rep: 26S proteasome subunit RPN2a -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1004
Score = 36.3 bits (80), Expect = 0.24
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = -3
Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVS 252
FEIL NPARV+ Q K + +++ S + P+K + G V+L E E ++S
Sbjct: 911 FEILVNPARVVPAQEKYIKLLDDSRYVPVK-LAPSGFVLLKDLREHEPEVLS 961
>UniRef50_A0CHF2 Cluster: Chromosome undetermined scaffold_180,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_180,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 943
Score = 35.9 bits (79), Expect = 0.31
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = -3
Query: 401 ILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVML 288
IL+NP R++ +Q K++ ++EGS + PL G+VML
Sbjct: 852 ILTNPCRILDKQKKHIQLLEGSRYQPLLKDRKQGLVML 889
>UniRef50_Q18115 Cluster: 26S proteasome non-ATPase regulatory subunit
1; n=4; Caenorhabditis|Rep: 26S proteasome non-ATPase
regulatory subunit 1 - Caenorhabditis elegans
Length = 965
Score = 35.5 bits (78), Expect = 0.42
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -3
Query: 398 LSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTG-EGEQVLVSRL 246
L NPARV+ Q + ++I + ++P+K + GGI++ + E E+ LVS +
Sbjct: 886 LQNPARVIPAQRQLISISDARAYSPMKPLYKGGIIVADRVDKEREEKLVSEV 937
>UniRef50_A7QXR1 Cluster: Chromosome undetermined scaffold_229,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_229, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 886
Score = 34.7 bits (76), Expect = 0.73
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = -3
Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVS 252
FEIL+NPARV+ Q K + +E S + P+K + G V+L E ++S
Sbjct: 794 FEILTNPARVVPAQEKFIKFLEESRYVPVK-LAPSGFVLLKDLRPTEPEVLS 844
>UniRef50_A7PF98 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 561
Score = 33.9 bits (74), Expect = 1.3
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 168 HINHPD-IQKALEVQAPSLPLPSGRMRQPANQD 263
H + P+ ++K+LE+Q P PLP G M+QP D
Sbjct: 269 HSSEPEKLKKSLELQKPVQPLPPGAMKQPLPTD 301
>UniRef50_Q7VR89 Cluster: Succinyl-CoA synthetase beta chain; n=2;
Candidatus Blochmannia|Rep: Succinyl-CoA synthetase beta
chain - Blochmannia floridanus
Length = 399
Score = 33.5 bits (73), Expect = 1.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 304 EVSSC*TTPVKENKSWLAGCRIRPEGRGREG 212
E+ C + +KE W+ C+IR GRG+ G
Sbjct: 30 EIKDCISEIIKEGPPWIVKCQIRSGGRGKSG 60
>UniRef50_Q5CSW3 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 766
Score = 33.1 bits (72), Expect = 2.2
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = -3
Query: 227 QRKRRSLNLQSLLNIWMIDVLLSNCNCHRNRVNICIVLNKQ 105
+ +++ N + +L +++ +L C C N++N C + NK+
Sbjct: 553 ETSKKAFNKEEILFVYIFSLLTGTCLCGENQINNCKICNKE 593
>UniRef50_Q54JM5 Cluster: 26S proteasome regulatory subunit S1; n=1;
Dictyostelium discoideum AX4|Rep: 26S proteasome
regulatory subunit S1 - Dictyostelium discoideum AX4
Length = 975
Score = 33.1 bits (72), Expect = 2.2
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -3
Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNH--TGEGEQVLVSRLPHS 237
FE SNPAR++ +QL+ + + + + P+K GIVML E EQ++V P +
Sbjct: 876 FERKSNPARIVPRQLQYVQF-DDARYQPIKKSPAIGIVMLRDLTPNEPEQLVVKEKPET 933
>UniRef50_Q7R4S0 Cluster: GLP_440_57839_61885; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_57839_61885 - Giardia lamblia
ATCC 50803
Length = 1348
Score = 32.7 bits (71), Expect = 2.9
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -3
Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVM 291
+ IL P R++++Q++++ I E S P+ ++ G +VM
Sbjct: 1304 YSILQTPCRILKRQVEHVIIPENSDLVPISSMSQGIVVM 1342
>UniRef50_A6PUP9 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 627
Score = 31.5 bits (68), Expect = 6.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 348 CRGFRFHSFKGYHYWRYRHV 289
C GF FH++ G H+W+ ++V
Sbjct: 281 CPGFAFHAYDGQHHWQMKNV 300
>UniRef50_A7EXI9 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 1346
Score = 31.5 bits (68), Expect = 6.8
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -3
Query: 389 PARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRS 210
P +R+ L + +I+ SG + + D+T +LN T +Q S + S+ RQ +R S
Sbjct: 255 PQPPIRESLDSASIMSNSGSSTISDVTTSREPLLNETSSTQQ-RASSISVSSNRQNQRLS 313
>UniRef50_A6RM25 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 1500
Score = 31.5 bits (68), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 384 QSDETAIEEFNYCRGFRFHSFKGYHYWRY 298
Q D +F RGFR H+ KG+ +WR+
Sbjct: 865 QYDGEKAGKFKEVRGFRLHADKGFTFWRF 893
>UniRef50_UPI0000DC1389 Cluster: nuclear transcription factor, X-box
binding-like 1; n=1; Rattus norvegicus|Rep: nuclear
transcription factor, X-box binding-like 1 - Rattus
norvegicus
Length = 148
Score = 31.1 bits (67), Expect = 8.9
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -3
Query: 326 PLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMI 174
PL + + LN +G + L SRLPH A ++K L SLL I +I
Sbjct: 61 PLNHLMAKLSLYLNRLRQGREALDSRLPHGA--EKKEVGKKLSSLLTIGLI 109
>UniRef50_Q3MCI0 Cluster: Putative uncharacterized protein
precursor; n=1; Anabaena variabilis ATCC 29413|Rep:
Putative uncharacterized protein precursor - Anabaena
variabilis (strain ATCC 29413 / PCC 7937)
Length = 353
Score = 31.1 bits (67), Expect = 8.9
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 356 LTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLN 204
+T ++ +GF D IG I + TGE + LV L S R RR++N
Sbjct: 180 ITALKTTGFNSAGDANIGDITLNQKTGELKVDLVGHLDVSGRYVDTRRTVN 230
>UniRef50_Q7QQD3 Cluster: GLP_386_11718_9673; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_386_11718_9673 - Giardia lamblia
ATCC 50803
Length = 681
Score = 31.1 bits (67), Expect = 8.9
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -3
Query: 293 MLNHTGEGEQV-LVSRLPHSARRQRKRRSLNLQSLLN 186
++NHTGEG+ V VS L ++ R Q K R +L+++ N
Sbjct: 309 VINHTGEGDVVECVSELVNTMREQVKAREEDLRNVSN 345
>UniRef50_A2F2R6 Cluster: Proteasome/cyclosome repeat family
protein; n=1; Trichomonas vaginalis G3|Rep:
Proteasome/cyclosome repeat family protein - Trichomonas
vaginalis G3
Length = 854
Score = 31.1 bits (67), Expect = 8.9
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 404 EILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE 267
EI++NPARV +Q+K + ++P+ ++ G +ML GE E
Sbjct: 807 EIITNPARVTLEQIKFIDPTYSKDWSPIITPSL-GFIMLKKEGEQE 851
>UniRef50_O94502 Cluster: Mitochondrial carrier, calcium binding
subfamily; n=1; Schizosaccharomyces pombe|Rep:
Mitochondrial carrier, calcium binding subfamily -
Schizosaccharomyces pombe (Fission yeast)
Length = 426
Score = 31.1 bits (67), Expect = 8.9
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 329 TPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVLLSNCN 150
T L DITI ++ +++ + VSRLP S + +N QSLL + L N N
Sbjct: 3 TELSDITIQSVLPCDYSLFKNNLRVSRLPESRFVFSPKEEINCQSLLQGPELKTALDNLN 62
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,433,217
Number of Sequences: 1657284
Number of extensions: 6254784
Number of successful extensions: 17106
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17100
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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