Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   2.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   2.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 90  LLFNTLFIQYDTYINPISMTITVR**HINHPDIQKALEVQAPSLPLPSGRMRQP 251
           ++FN LF + D    PI++T+++         +Q+ + V+ P   L    +R P
Sbjct: 313 IVFNGLFTEEDVADVPINVTLSL---DEKKYILQEVVRVKKPHYELNMVEVRSP 363


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = -3

Query: 326 PLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVLLSNCNC 147
           PLKDIT   +  +   G  E   +  +P    + RK     ++  L    ID LLSN   
Sbjct: 59  PLKDITPPDLEGILDLGRHENFSLF-IP----KHRKVAGKLIRIFLAAESIDDLLSNAVF 113

Query: 146 HRNRVN 129
            R+RVN
Sbjct: 114 CRDRVN 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,991
Number of Sequences: 336
Number of extensions: 1669
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)