Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    31   0.069
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   2.0  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    25   4.5  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   6.0  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   6.0  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    24   7.9  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    24   7.9  

>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 31.1 bits (67), Expect = 0.069
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 329 TPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVLLSNCN 150
           T L DITI  ++  +++     + VSRLP S      +  +N QSLL    +   L N N
Sbjct: 3   TELSDITIQSVLPCDYSLFKNNLRVSRLPESRFVFSPKEEINCQSLLQGPELKTALDNLN 62


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 123 TYINPISMTITVR**HINHPDIQKALEVQAPSLPLPSGRMRQPANQD 263
           T ++ +S T++V+   IN    +KAL   +PSL L S    Q  + D
Sbjct: 131 TQMDQLSNTVSVKDLSINRNTNKKALNAVSPSLNLSSNSSVQDVSID 177


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 174 NHPDIQKALEVQAPSLPLPSGRMRQPANQDLFSFTGVVQHDDTSNSD 314
           N P ++ ++     SL L + R   P NQD  ++  +    DT+N D
Sbjct: 37  NGPYLKISMNKAPQSLGLCTARGDSPTNQDRMAYGYLNNLKDTTNRD 83


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 286 TTPVKENKSWLAGCRIRPEG 227
           T+PV+ + SW+ G R R EG
Sbjct: 268 TSPVEGSLSWIIGKRRRKEG 287


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 177 HPDIQKALEVQAPSLPLPSGRMRQPANQDLFSFTGVVQHDD 299
           HP I   +      LP+P  ++  PAN  L +  G+   ++
Sbjct: 350 HPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEE 390


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 404 EILSNPARVMRQQLKNLTIV-EGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHS 237
           E  +N   V R ++++ +++ EGS      D+ +  + M  HT E   VLV+R   S
Sbjct: 8   ESATNGHLVKRIRIQDSSLITEGSVLQRTSDLNVPNLQMFGHTAE---VLVARFDPS 61


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVML 288
           +EI     + + +  KN+T ++  G   L DI +  I  L
Sbjct: 314 YEITDIGVQCLLKSCKNITYIDFGGCLRLSDIAVSAIAKL 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,512,999
Number of Sequences: 5004
Number of extensions: 26745
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)