Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...    38   0.004
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    35   0.029
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    27   4.3  
03_02_0376 - 7883631-7883858,7883941-7884069,7884172-7884390,788...    27   5.7  
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435     27   7.6  

>04_04_1094 -
           30832987-30833316,30833530-30834273,30834484-30834742,
           30834821-30835041,30835127-30835375,30835460-30835595,
           30835864-30836207,30836589-30836758,30837080-30837185,
           30837267-30837330,30838462-30838616
          Length = 925

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -3

Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVM 291
           F+IL+NPARV+  Q K +  +EGS + P+K    G I++
Sbjct: 832 FQILTNPARVIPTQEKFIKFIEGSRYVPVKPAPSGFILL 870


>08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,
            7586887-7587055,7587185-7587319,7587409-7587728,
            7587992-7588127,7588224-7588472,7588567-7588787,
            7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -3

Query: 407  FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLN--HTGEGEQVLVSRLP 243
            F+IL+NPARV+  Q K +  +EG  + P+K +   G V+L      E E+++++  P
Sbjct: 894  FQILTNPARVVPAQEKFIKFLEGGRYEPVK-LAPSGFVLLRDLKPTETEELVLTDAP 949


>11_01_0466 +
           3607947-3610608,3610725-3611018,3611494-3611895,
           3611984-3612217,3614113-3614138,3614446-3614633,
           3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 24/87 (27%), Positives = 34/87 (39%)
 Frame = -3

Query: 392 NPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRR 213
           NP RV    L N  +      +P    ++G +  L H          R+P S    R+ R
Sbjct: 72  NPPRVTSIDLSNQNLA--GNISP----SLGNLTFLKHLSLATNEFTGRIPESLGHLRRLR 125

Query: 212 SLNLQSLLNIWMIDVLLSNCNCHRNRV 132
           SL L    N  +  ++ S  NC   RV
Sbjct: 126 SLYLS---NNTLQGIIPSFANCSDLRV 149


>03_02_0376 -
           7883631-7883858,7883941-7884069,7884172-7884390,
           7884505-7884801,7886534-7886839
          Length = 392

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 225 LPSGRMRQPANQDLF 269
           LP+G++ QPA+QD+F
Sbjct: 214 LPAGQLEQPASQDIF 228


>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
          Length = 1072

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 347 VEGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQ 198
           ++G+  + L ++ IG +  L H      + VS LP S  R RK RSL+++
Sbjct: 628 LKGTYISALPNL-IGNLRFLQHIDLCGCINVSELPESIVRLRKLRSLDIR 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,216,655
Number of Sequences: 37544
Number of extensions: 164851
Number of successful extensions: 454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)