Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D44466-1|BAA07918.1|  953|Homo sapiens proteasome subunit p112 p...    52   1e-06
BC114434-1|AAI14435.1|  953|Homo sapiens proteasome 26S non-ATPa...    52   1e-06
BC112344-1|AAI12345.1|  953|Homo sapiens proteasome (prosome, ma...    52   1e-06
BC094720-1|AAH94720.1|  953|Homo sapiens proteasome (prosome, ma...    52   1e-06
AC009407-1|AAX93127.1|  953|Homo sapiens unknown protein.              52   1e-06
AK131318-1|BAD18481.1|  276|Homo sapiens protein ( Homo sapiens ...    30   2.6  

>D44466-1|BAA07918.1|  953|Homo sapiens proteasome subunit p112
            protein.
          Length = 953

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = -3

Query: 407  FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLV 255
            F++L NPARVM  QLK LT+ E   + P K ++IGGI++L  T E  + LV
Sbjct: 875  FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELV 925


>BC114434-1|AAI14435.1|  953|Homo sapiens proteasome 26S non-ATPase
            subunit 1 protein.
          Length = 953

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = -3

Query: 407  FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLV 255
            F++L NPARVM  QLK LT+ E   + P K ++IGGI++L  T E  + LV
Sbjct: 875  FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELV 925


>BC112344-1|AAI12345.1|  953|Homo sapiens proteasome (prosome,
            macropain) 26S subunit, non-ATPase, 1 protein.
          Length = 953

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = -3

Query: 407  FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLV 255
            F++L NPARVM  QLK LT+ E   + P K ++IGGI++L  T E  + LV
Sbjct: 875  FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELV 925


>BC094720-1|AAH94720.1|  953|Homo sapiens proteasome (prosome,
            macropain) 26S subunit, non-ATPase, 1 protein.
          Length = 953

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = -3

Query: 407  FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLV 255
            F++L NPARVM  QLK LT+ E   + P K ++IGGI++L  T E  + LV
Sbjct: 875  FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELV 925


>AC009407-1|AAX93127.1|  953|Homo sapiens unknown protein.
          Length = 953

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = -3

Query: 407  FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLV 255
            F++L NPARVM  QLK LT+ E   + P K ++IGGI++L  T E  + LV
Sbjct: 875  FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELV 925


>AK131318-1|BAD18481.1|  276|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16314 fis, clone SPLEN2030847, highly  similar
           to Mus musculus Kif21b (Kif21b) mRNA. ).
          Length = 276

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 RTCSPSPVWFNMTIPPIVISFKGVKPEPS 345
           R CSP+P   ++ I PI  S  GV P PS
Sbjct: 104 RPCSPTPAESSLDILPISPSLSGVTPVPS 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,389,037
Number of Sequences: 237096
Number of extensions: 962737
Number of successful extensions: 5769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5769
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)