Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001598-1|AAN71353.1| 1020|Drosophila melanogaster RE29621p pro...    69   2e-12
AY069503-1|AAL39648.1|  630|Drosophila melanogaster LD22648p pro...    69   2e-12
AF312231-1|AAG33625.1|  946|Drosophila melanogaster proteosome s...    69   2e-12
AF145303-1|AAF08384.1| 1020|Drosophila melanogaster 26S proteaso...    69   2e-12
AE014297-4344|AAF56868.1| 1020|Drosophila melanogaster CG11888-P...    69   2e-12
AE014296-2144|AAF49916.1|  733|Drosophila melanogaster CG10663-P...    30   1.3  
AY119265-1|AAM51125.1|  108|Drosophila melanogaster SD23839p pro...    27   7.2  
AY061303-1|AAL28851.1|  497|Drosophila melanogaster LD21615p pro...    27   7.2  
AE014298-541|AAF45883.1|  497|Drosophila melanogaster CG2875-PA,...    27   7.2  
AE014298-540|AAF45882.1|  496|Drosophila melanogaster CG2875-PB,...    27   7.2  
AE014298-84|AAF45536.1|  108|Drosophila melanogaster CG16982-PA ...    27   7.2  

>BT001598-1|AAN71353.1| 1020|Drosophila melanogaster RE29621p protein.
          Length = 1020

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = -3

Query: 404  EILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE 267
            EIL NPARV+RQQLK L++++G  + PLKD+TIGGI++  HTG+ E
Sbjct: 943  EILQNPARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAE 988


>AY069503-1|AAL39648.1|  630|Drosophila melanogaster LD22648p
           protein.
          Length = 630

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = -3

Query: 404 EILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE 267
           EIL NPARV+RQQLK L++++G  + PLKD+TIGGI++  HTG+ E
Sbjct: 553 EILQNPARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAE 598


>AF312231-1|AAG33625.1|  946|Drosophila melanogaster proteosome
            subunit RPN2 protein.
          Length = 946

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = -3

Query: 404  EILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE 267
            EIL NPARV+RQQLK L++++G  + PLKD+TIGGI++  HTG+ E
Sbjct: 869  EILQNPARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAE 914


>AF145303-1|AAF08384.1| 1020|Drosophila melanogaster 26S proteasome
            regulatory complexsubunit p110 protein.
          Length = 1020

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = -3

Query: 404  EILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE 267
            EIL NPARV+RQQLK L++++G  + PLKD+TIGGI++  HTG+ E
Sbjct: 943  EILQNPARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAE 988


>AE014297-4344|AAF56868.1| 1020|Drosophila melanogaster CG11888-PA
            protein.
          Length = 1020

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = -3

Query: 404  EILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE 267
            EIL NPARV+RQQLK L++++G  + PLKD+TIGGI++  HTG+ E
Sbjct: 943  EILQNPARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAE 988


>AE014296-2144|AAF49916.1|  733|Drosophila melanogaster CG10663-PA
           protein.
          Length = 733

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -3

Query: 287 NHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVLLSNCN--CHRNRVNICIVL 114
           +H  +G +V   R+PH  R   +RRSLN     + W      S C+  C R R   C V 
Sbjct: 17  SHWIDGRRVHRLRMPHPQRWSGRRRSLNQHQPFSRWS---QWSPCDEECVRRRERFCKVK 73

Query: 113 NK 108
            K
Sbjct: 74  RK 75


>AY119265-1|AAM51125.1|  108|Drosophila melanogaster SD23839p
           protein.
          Length = 108

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 239 SARRQRKRRSLNLQSLLNIWMIDVLLSNCNCHRNRV-NICI 120
           S++  +KR  +   + + +W  D+++ NC   RN + ++CI
Sbjct: 14  SSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCI 54


>AY061303-1|AAL28851.1|  497|Drosophila melanogaster LD21615p
           protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 24/90 (26%), Positives = 38/90 (42%)
 Frame = -3

Query: 368 QLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLL 189
           QLK+L   E    +P+K +    IV L   G+           SA++Q     LN + L 
Sbjct: 173 QLKSLVPDEDFKDSPIKAMNFLSIVNLLDMGKSVLSTADYHVESAKKQTFNYELNRKRLN 232

Query: 188 NIWMIDVLLSNCNCHRNRVNICIVLNKQCI 99
           N+W   +   N    +    I +VL ++ I
Sbjct: 233 NLWATIMAKGNEVDEKLHRQILVVLLERVI 262


>AE014298-541|AAF45883.1|  497|Drosophila melanogaster CG2875-PA,
           isoform A protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 24/90 (26%), Positives = 38/90 (42%)
 Frame = -3

Query: 368 QLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLL 189
           QLK+L   E    +P+K +    IV L   G+           SA++Q     LN + L 
Sbjct: 173 QLKSLVPDEDFKDSPIKAMNFLSIVNLLDMGKSVLSTADYHVESAKKQTFNYELNRKRLN 232

Query: 188 NIWMIDVLLSNCNCHRNRVNICIVLNKQCI 99
           N+W   +   N    +    I +VL ++ I
Sbjct: 233 NLWATIMAKGNEVDEKLHRQILVVLLERVI 262


>AE014298-540|AAF45882.1|  496|Drosophila melanogaster CG2875-PB,
           isoform B protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 24/90 (26%), Positives = 38/90 (42%)
 Frame = -3

Query: 368 QLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLL 189
           QLK+L   E    +P+K +    IV L   G+           SA++Q     LN + L 
Sbjct: 172 QLKSLVPDEDFKDSPIKAMNFLSIVNLLDMGKSVLSTADYHVESAKKQTFNYELNRKRLN 231

Query: 188 NIWMIDVLLSNCNCHRNRVNICIVLNKQCI 99
           N+W   +   N    +    I +VL ++ I
Sbjct: 232 NLWATIMAKGNEVDEKLHRQILVVLLERVI 261


>AE014298-84|AAF45536.1|  108|Drosophila melanogaster CG16982-PA
           protein.
          Length = 108

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 239 SARRQRKRRSLNLQSLLNIWMIDVLLSNCNCHRNRV-NICI 120
           S++  +KR  +   + + +W  D+++ NC   RN + ++CI
Sbjct: 14  SSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCI 54


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,643
Number of Sequences: 53049
Number of extensions: 289224
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)