Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   4.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.4  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   5.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 MRQPANQDLFSFTGVVQHDDTSN 308
           ++ PAN D+F  +   +H   +N
Sbjct: 412 LKGPANPDIFRVSCATEHSQLTN 434


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 MRQPANQDLFSFTGVVQHDDTSN 308
           ++ PAN D+F  +   +H   +N
Sbjct: 118 LKGPANPDIFRVSCATEHSQLTN 140


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 174 NHPDIQKALEVQAPSLPL 227
           N P++ +A+    PS+PL
Sbjct: 102 NTPEVHQAINTCQPSIPL 119


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 280 VWFNMTIPPIVISFKGV 330
           +WF    P +VI+F G+
Sbjct: 286 LWFMAWTPYLVINFSGI 302


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 280 VWFNMTIPPIVISFKGV 330
           +WF    P +VI+F G+
Sbjct: 36  LWFMAWTPYLVINFSGI 52


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 87  LLLFNTLFIQYDTYINPIS 143
           L L   LF +YD  + PIS
Sbjct: 45  LKLKRYLFCEYDPNVRPIS 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,391
Number of Sequences: 438
Number of extensions: 1895
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)