Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32730.1 68415.m04005 26S proteasome regulatory subunit, puta...    36   0.008
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta...    36   0.010
At3g42830.1 68416.m04485 ring-box protein Roc1/Rbx1/Hrt1, putati...    33   0.074
At5g44130.1 68418.m05401 fasciclin-like arabinogalactan-protein,...    31   0.39 
At5g20570.1 68418.m02442 ring-box protein-related similar to rin...    29   1.2  
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr...    28   2.1  
At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat...    28   2.8  
At1g35650.1 68414.m04431 Ulp1 protease family protein PF02902: U...    28   2.8  
At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-contain...    27   4.8  
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    27   4.8  
At2g47820.1 68415.m05968 expressed protein                             27   4.8  
At4g02920.2 68417.m00396 expressed protein                             27   6.4  
At4g02920.1 68417.m00395 expressed protein                             27   6.4  
At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol 3-phosphat...    27   6.4  
At3g28340.1 68416.m03540 galactinol synthase, putative                 26   8.5  
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    26   8.5  
At2g26070.1 68415.m03130 expressed protein                             26   8.5  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    26   8.5  

>At2g32730.1 68415.m04005 26S proteasome regulatory subunit, putative
            contains similarity to 26S proteasome regulatory subunit
            S1 SP:O88761, GI:3288594 from [Rattus norvegicus]
          Length = 1004

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = -3

Query: 407  FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVS 252
            FEIL NPARV+  Q K + +++ S + P+K +   G V+L    E E  ++S
Sbjct: 911  FEILVNPARVVPAQEKYIKLLDDSRYVPVK-LAPSGFVLLKDLREHEPEVLS 961


>At1g04810.1 68414.m00477 26S proteasome regulatory subunit, putative
            contains similarity to 26S proteasome regulatory subunit
            S1 SP:O88761, GI:3288594 from [Rattus norvegicus]
          Length = 1001

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = -3

Query: 407  FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVS 252
            FEIL NPARV+  Q K + ++E S + P+K +   G V+L      E  ++S
Sbjct: 904  FEILVNPARVVPSQEKYIKLMEDSRYVPMK-LAPSGFVLLRDLRPHEPEVLS 954


>At3g42830.1 68416.m04485 ring-box protein Roc1/Rbx1/Hrt1, putative
           E3 ubiquitin ligase, SCF complex subunit; contains
           similarity to ring-box protein 1 RBX1 GI:4769004 from
           [Homo sapiens]
          Length = 115

 Score = 33.1 bits (72), Expect = 0.074
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 272 GEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVLLSNCNCHRNRV-NICI 120
           GE   +S +P S+ +  KR  L   S + +W  D+++ NC   RN + ++CI
Sbjct: 11  GESSSIS-VPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCI 61


>At5g44130.1 68418.m05401 fasciclin-like arabinogalactan-protein,
           putative similar to gi_13377784_gb_AAK20861
          Length = 247

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -3

Query: 365 LKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLN 186
           L++L  V     T      +GG+  LN TG+G QV VS         R   SL  +  L 
Sbjct: 115 LEDLLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVST---GVVETRLSTSLRQERPLA 171

Query: 185 IWMIDVLL 162
           ++++D++L
Sbjct: 172 VYVVDMVL 179


>At5g20570.1 68418.m02442 ring-box protein-related similar to
           ring-box protein 1 GI:4769004 from [Homo sapiens]
          Length = 118

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 239 SARRQRKRRSLNLQSLLNIWMIDVLLSNCNCHRNRV-NICI 120
           S+ ++ KR  +   S + +W  D+++ NC   RN + ++CI
Sbjct: 24  SSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCI 64


>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 872

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 302 GIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDV--LLSNCN 150
           GIV   H  + EQV V  L HS+ +  K+    ++ LL +   ++  L+  CN
Sbjct: 577 GIVYHGHLNDTEQVAVKLLSHSSTQGYKQFKAEVELLLRVHHTNLVNLVGYCN 629


>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
          3-phosphatidyltransferase, putative /
          phosphatidylinositol synthase, putative similar to
          phosphatidylinositol synthase (PIS1) - Arabidopsis
          thaliana, PID:e1313354 [gi:3367632]
          Length = 225

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 65 YLRVILSLTKFIVCISNKT 9
          Y+RV+L+   F VC SNKT
Sbjct: 21 YMRVLLNCIAFSVCFSNKT 39


>At1g35650.1 68414.m04431 Ulp1 protease family protein PF02902: Ulp1
           protease family, C-terminal catalytic domain; similar to
           At1g21020, At3g26530, At1g08760, At1g08740, At2g29240
          Length = 736

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/69 (20%), Positives = 36/69 (52%)
 Frame = +3

Query: 174 NHPDIQKALEVQAPSLPLPSGRMRQPANQDLFSFTGVVQHDDTSNSDIL*RSET*TLDNS 353
           ++ ++ + L +  PSLP P+  +  P ++ +  F   ++ D  +N+ I        +D++
Sbjct: 506 DNANLSQMLMISEPSLPAPTNDIVDPDDKVIDIFINSIRIDWRANNIIEKHQAVSFIDST 565

Query: 354 *ILQLLSHH 380
            +++L  H+
Sbjct: 566 FVVELCKHY 574


>At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           weak similarity to SP|P79245 Steroidogenic acute
           regulatory protein, mitochondrial precursor (StAR) {Ovis
           aries}; contains Pfam profiles PF01852: START domain,
           PF00169: PH domain
          Length = 719

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 180 PDIQKALEVQAPSLPLPSGRMRQPA-NQDLFSFTGVVQHDDTSNS 311
           PD +   E         + +  +PA N DL  F+G ++HDD  N+
Sbjct: 455 PDSEPEPETSKQDQETDAKKTEEPALNIDLSCFSGNLRHDDNENA 499


>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 209 LNLQSLLNIWMIDVLLSNCNCHRN 138
           LN+  + NIW + +LL N N H +
Sbjct: 242 LNIHDVPNIWHVPLLLRNQNAHHS 265


>At2g47820.1 68415.m05968 expressed protein
          Length = 805

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 233 RRQRKRRSLNLQSLLNIWMIDVLLSNCNCH 144
           R+ R RRS+  Q LL+ W    LLS  + H
Sbjct: 207 RKSRSRRSVQGQKLLSGWRQQELLSRISSH 236


>At4g02920.2 68417.m00396 expressed protein
          Length = 419

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = -3

Query: 344 EGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVL 165
           E   FTP K   +  +  L    +    L S   H+ +R+ K R L  ++ L+ +   + 
Sbjct: 230 ESDVFTPAKLKAVTVLAPLKSPEKSR--LKSPRKHNTKRKAKERDLYKRNHLHAYESLLS 287

Query: 164 LSNCNCHRNRVNICIVLNKQCIE 96
           L   N HR++    + L K C E
Sbjct: 288 LMIGNDHRHKHTTVLSLQKSCGE 310


>At4g02920.1 68417.m00395 expressed protein
          Length = 418

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = -3

Query: 344 EGSGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVL 165
           E   FTP K   +  +  L    +    L S   H+ +R+ K R L  ++ L+ +   + 
Sbjct: 229 ESDVFTPAKLKAVTVLAPLKSPEKSR--LKSPRKHNTKRKAKERDLYKRNHLHAYESLLS 286

Query: 164 LSNCNCHRNRVNICIVLNKQCIE 96
           L   N HR++    + L K C E
Sbjct: 287 LMIGNDHRHKHTTVLSLQKSCGE 309


>At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol
          3-phosphatidyltransferase / phosphatidylinositol
          synthase (PIS1) identical to phosphatidylinositol
          synthase (PIS1) GB:AJ000539 [gi:3367632]
          Length = 227

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 65 YLRVILSLTKFIVCISNK 12
          Y+RV+L+   F VC SNK
Sbjct: 24 YMRVLLNCVAFAVCFSNK 41


>At3g28340.1 68416.m03540 galactinol synthase, putative 
          Length = 365

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 247 NRLTRTCSPSPVWFNMTIPPIVISFKGVKPEPSTIVKFFNC 369
           NRL   C PS V   MT+ P  +  +G      +I+K  +C
Sbjct: 60  NRLLLACDPSAVHIAMTLDPAYL--RGTVSAVHSILKHTSC 98


>At3g22980.1 68416.m02898 elongation factor Tu family protein
           similar to eukaryotic translation elongation factor 2
           GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 380 VMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTG 276
           +   +L +L ++ G G TP+ ++  G +V +   G
Sbjct: 476 IQEAELHSLYLMMGQGLTPVTEVKAGNVVAIRGLG 510


>At2g26070.1 68415.m03130 expressed protein
          Length = 250

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 247 NRLTRTCSPSPVWFNMTIPPIVISFKGVKPEPSTIVKFF-NCCLITLAGLLKI 402
           N L R C    + +NM    I++  KG     S++V+ F  C ++T  G++ +
Sbjct: 167 NCLNRLCYGGSMEWNMVNVAILLMIKGKWINGSSVVRSFLPCAVVTSLGVVLV 219


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 338 SGFTPLKDITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVL 165
           S +TP  D+   G+VML       ++L  R+P    + R  RSL   +   +  ID L
Sbjct: 571 SAYTPKSDVYSFGVVML-------ELLTGRVPFDGSKPRPERSLVRWATPQLHDIDAL 621


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,624,039
Number of Sequences: 28952
Number of extensions: 134907
Number of successful extensions: 414
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)