Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0007.Seq
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.14 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   1.3  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   2.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   3.0  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    24   6.8  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    23   9.0  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.5 bits (63), Expect = 0.14
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 16  PCPN-FDLDCIRKYFSSNSKCQITLGPV-PDPLLLNNYRLDIANSNITAQFNNVSVRGLN 189
           PC + F  +CI+ +   N  C I   PV P+    NN   D AN +  +   N S    N
Sbjct: 413 PCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNTSTDSANGHNPSNHANPSTSTTN 472


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 267  KMLSFHFCCQHQFLSFSVEVKFXDISIETSNAYVVKL 157
            K+LS    C H++ S   E+K  D+S +  +   VKL
Sbjct: 2079 KLLSLMRRCDHKYASLCNELKRDDLSADDLSTIKVKL 2115


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 7   AERPCPNFDLDCIRKYFSS 63
           ++  C  F LDC RKYF++
Sbjct: 291 SKESCARFILDCDRKYFNT 309


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = +1

Query: 25   NFDLDCIRKYFSSNSKCQI-TLGP-----VPDPLLLNNYRLDIANSNITAQFNNVSVRGL 186
            NF + C RKYF    K ++ TL P     V DP  L      +  S+   + N+V  + +
Sbjct: 1876 NFLMKCTRKYFDEVRKLRLGTLKPENLQFVKDPSSLALETNLLPASDTIEEKNDVGNKQV 1935

Query: 187  NGNIXEFYFNRKTE 228
            N +I +  F ++ E
Sbjct: 1936 NSHILDPGFLKEEE 1949


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 91  PVPDPLLLNNYRLDIANSNITAQFNNVSVRGLNGNIXEFYFNRKTEKL 234
           P P+   L  Y  +I + N   +  N  VR   G+  E Y N +T  +
Sbjct: 352 PAPNKYAL--YVTNIKSGNSVGEDTNALVRIATGSAGEMYVNVETRSI 397


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 261 LSFHFCCQHQFLSFSVEVKFXDISIETSNAY 169
           + +HF  + +F     E KF + ++ + N Y
Sbjct: 65  IDYHFVTKEEFQKLVAEEKFVEWAVFSGNMY 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,241
Number of Sequences: 5004
Number of extensions: 19936
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)