Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0007.Seq
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0159 - 13325949-13326839                                         27   2.7  
06_03_1023 - 26952195-26952635,26952723-26952934,26953038-269537...    26   8.3  

>01_03_0159 - 13325949-13326839
          Length = 296

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 82  TLGPVPDPLLLNNYRLDIANSNITAQFNNVSVRGLNGNI 198
           T  P P P + N++RL   +    + +N+  + G NG +
Sbjct: 150 TSSPAPPPAVDNHHRLSPPHDAAGSNYNHPELAGYNGGV 188


>06_03_1023 -
           26952195-26952635,26952723-26952934,26953038-26953757,
           26955042-26955735
          Length = 688

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +1

Query: 88  GPVPD--PLL-LNNYR-LDIANSNITAQFNNVSV 177
           GP PD  PL  L   R L IAN+N+T  F +VS+
Sbjct: 97  GPAPDMAPLAALRGLRALSIANNNLTGPFPDVSM 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,704,575
Number of Sequences: 37544
Number of extensions: 123322
Number of successful extensions: 256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)