Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0007.Seq
         (329 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  

>SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 127 LDIANSNITAQFNNVSVRGLNGNI 198
           + I  SNI  Q NNVS +GL G +
Sbjct: 377 MTILTSNIIQQLNNVSFQGLTGPV 400


>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 106 LLLNNYRLDIANSNITAQFNNVSVRGLNGN 195
           L + NYR +I     + ++N+   +GLN N
Sbjct: 696 LKIENYRNNIRGGRASRKYNHFDTKGLNEN 725


>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 300 PVVFKYHLWXIKMLSFHFCCQHQFLSFSVEVKFXDISIETSNAYVVKLGGNI 145
           P+V  YH    +    H+     +L+  V V F   S+  S+A     GG++
Sbjct: 144 PIVKVYHYLSARTSKRHYSASSTWLAVFVGVIFSAASLSRSSALFYGYGGSL 195


>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 16   PCPNF--DLDCIRKYFSSNSKCQIT 84
            PCPN      C R+  SS  KC++T
Sbjct: 990  PCPNLYEHRPCARQRCSSTKKCEVT 1014


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,773,941
Number of Sequences: 59808
Number of extensions: 139974
Number of successful extensions: 301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)