Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0007.Seq
         (329 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    25   0.56 
DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    22   6.9  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 127 LDIANSNITAQFNNVSVRGLNGNIXEFY-FNRKTEKLVLATEVKA*HLDXPQVVFKYNRK 303
           LD+ +++I    N V+  G    +     F+R T    L  + +A  +    V   +NR 
Sbjct: 74  LDLVHTDICGPMNTVTSGGSRYFLTMIDDFSRYTTVYFLKRKSEAAEVIEEYVTMVHNRF 133

Query: 304 GKEPIVTR 327
           G+ PIV R
Sbjct: 134 GRNPIVIR 141


>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 180 SNAYVVKLGGNIRVCYI 130
           S+ +V+ + GN+ VCY+
Sbjct: 103 SSIFVLGVFGNVLVCYV 119


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,492
Number of Sequences: 2352
Number of extensions: 4084
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 22910151
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)