Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0007.Seq
(329 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 21 3.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 5.1
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 5.1
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 20 6.7
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 20 6.7
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 20 6.7
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 20 6.7
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 20 6.7
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 20 6.7
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 20 6.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 20 6.7
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 20 6.7
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 20 8.9
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 21.0 bits (42), Expect = 3.9
Identities = 11/59 (18%), Positives = 24/59 (40%)
Frame = +1
Query: 49 KYFSSNSKCQITLGPVPDPLLLNNYRLDIANSNITAQFNNVSVRGLNGNIXEFYFNRKT 225
++ + C + + +P L NY I + + ++V V L + F + +T
Sbjct: 187 RFLKNPRPCNVLATSLTEPYTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFLSSTRT 245
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.6 bits (41), Expect = 5.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 14 DLVRTSTWTVFVNISRV 64
+LVR +T+T VN++RV
Sbjct: 630 NLVRPNTFTDKVNLTRV 646
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 20.6 bits (41), Expect = 5.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +1
Query: 25 NFDLDCIRKYFSSNSKCQITL 87
N D+DCI + +K Q +
Sbjct: 479 NCDIDCINRVVQRGTKMQFCI 499
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 6.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 72 MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
+SNN + S + + Y KL YY I
Sbjct: 85 LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 6.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 72 MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
+SNN + S + + Y KL YY I
Sbjct: 85 LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 6.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 72 MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
+SNN + S + + Y KL YY I
Sbjct: 85 LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 6.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 72 MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
+SNN + S + + Y KL YY I
Sbjct: 85 LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 6.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 72 MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
+SNN + S + + Y KL YY I
Sbjct: 85 LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 6.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 72 MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
+SNN + S + + Y KL YY I
Sbjct: 85 LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 6.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 72 MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
+SNN + S + + Y KL YY I
Sbjct: 85 LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 20.2 bits (40), Expect = 6.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 209 TSTEKLRNWCWQQ 247
T TE+L CW Q
Sbjct: 150 TPTERLEALCWTQ 162
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 20.2 bits (40), Expect = 6.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 209 TSTEKLRNWCWQQ 247
T TE+L CW Q
Sbjct: 203 TPTERLEALCWTQ 215
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 19.8 bits (39), Expect = 8.9
Identities = 6/21 (28%), Positives = 14/21 (66%)
Frame = -2
Query: 67 NYSRNIYEYSPSRSSDKVFQR 5
NY+ N Y+Y+ + + K++ +
Sbjct: 323 NYNNNNYKYNYNNYNKKLYYK 343
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,908
Number of Sequences: 438
Number of extensions: 1640
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7342137
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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