Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0007.Seq
(329 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr... 29 1.00
At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger) fa... 28 1.3
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont... 27 4.0
At1g07480.2 68414.m00801 transcription factor IIA large subunit ... 27 4.0
At1g07480.1 68414.m00800 transcription factor IIA large subunit ... 27 4.0
At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger) fa... 26 5.3
At4g18760.1 68417.m02772 leucine-rich repeat family protein cont... 26 7.0
At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finger) fa... 26 7.0
At3g12350.1 68416.m01540 F-box family protein ; similar to SKP1... 25 9.3
At2g32800.1 68415.m04015 protein kinase family protein contains ... 25 9.3
At2g25850.2 68415.m03104 nucleotidyltransferase family protein c... 25 9.3
At2g25850.1 68415.m03103 nucleotidyltransferase family protein c... 25 9.3
At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger) fa... 25 9.3
At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger) fa... 25 9.3
>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 28.7 bits (61), Expect = 1.00
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 249 FCCQHQFLSFSVEVK-FXDISIETSNAYVVKLGGNIRVCYI 130
FCC+ Q + S ++ + +ET A ++ +GG +R+ +I
Sbjct: 154 FCCEDQPEAISEIIRVLTKLQLETIQAEIISVGGRMRINFI 194
>At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 227
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 25 NFDLDCIRKYFSSNSKCQITLGPVPDP 105
+F +DCI +F S S C + PV P
Sbjct: 130 SFHVDCIDTWFRSRSTCPLCRAPVQPP 156
>At1g74170.1 68414.m08590 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1068
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 88 GPVPDPLLLNNYRLDIANSNITAQF------NNVSVRGLNGN 195
G +PD LLLN LD+ N+ ++ N+S+ L GN
Sbjct: 703 GVIPDTLLLNVIVLDLRNNRLSGNLPEFINTQNISILLLRGN 744
>At1g07480.2 68414.m00801 transcription factor IIA large subunit /
TFIIA large subunit (TFIIA-L) identical to transcription
factor IIA large subunit GI:2826884 from [Arabidopsis
thaliana]
Length = 375
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 46 RKYFSSNSKCQITLGPVPDP 105
R +FSS+SK GP+PDP
Sbjct: 240 RDFFSSSSKIPQVDGPMPDP 259
>At1g07480.1 68414.m00800 transcription factor IIA large subunit /
TFIIA large subunit (TFIIA-L) identical to transcription
factor IIA large subunit GI:2826884 from [Arabidopsis
thaliana]
Length = 375
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 46 RKYFSSNSKCQITLGPVPDP 105
R +FSS+SK GP+PDP
Sbjct: 240 RDFFSSSSKIPQVDGPMPDP 259
>At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger)
family protein (ATL5) identical to RING-H2 zinc finger
protein ATL5 [Arabidopsis thaliana]
gi|4928401|gb|AAD33583
Length = 257
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 28 FDLDCIRKYFSSNSKCQITLGPV 96
F +DCI +F S S C + PV
Sbjct: 136 FHVDCIDTWFRSRSSCPLCRAPV 158
>At4g18760.1 68417.m02772 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 431
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 177 NAYVVKLGGNIRVCYI*SVIVEKQRI 100
N V K+GGN +CY SV+ K ++
Sbjct: 333 NLEVFKIGGNSDLCYNHSVLSSKMKL 358
>At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 106
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 16 PCPN-FDLDCIRKYFSSNSKCQITLGPVP 99
PC + FD +C+ K+F +N C + +P
Sbjct: 76 PCGHDFDDECVLKWFETNHSCPLCRFKLP 104
>At3g12350.1 68416.m01540 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 422
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 280 PVEXQDAKLSLLLPAPVSQFFC*SK 206
P + Q LSLL PA +S F C SK
Sbjct: 12 PEDLQLRILSLLTPAEISSFACTSK 36
>At2g32800.1 68415.m04015 protein kinase family protein contains
dual protein kinase domains, Pfam:PF00069
Length = 851
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -2
Query: 52 IYEYSPSRSSDKV-FQRP 2
+Y+Y P+RS D+V F+RP
Sbjct: 191 VYDYMPNRSLDRVLFRRP 208
>At2g25850.2 68415.m03104 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain; identical to cDNA GI:31747890
Length = 800
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 106 LLLNNYRLDIANSNITAQFNNVSVRGLNG 192
LL+ LDI+NS++ + +VR LNG
Sbjct: 179 LLVIPQDLDISNSSVLCDVDEQTVRSLNG 207
>At2g25850.1 68415.m03103 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain; identical to cDNA GI:31747890
Length = 787
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 106 LLLNNYRLDIANSNITAQFNNVSVRGLNG 192
LL+ LDI+NS++ + +VR LNG
Sbjct: 179 LLVIPQDLDISNSSVLCDVDEQTVRSLNG 207
>At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger)
family protein (ATL3) identical to RING-H2 zinc finger
protein (ATL3) GB:AF132013 (Arabidopsis thaliana)
Length = 324
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 25 NFDLDCIRKYFSSNSKCQITLGPVPDPLLLNNYRLDIANSN 147
+F ++CI +F S+S C I V P ++ R++ N
Sbjct: 149 SFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDN 189
>At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 28 FDLDCIRKYFSSNSKCQI---TLGPVPD 102
F +DCI +F S+S C + T+G V D
Sbjct: 143 FHVDCIDMWFQSHSTCPLCRNTVGSVED 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,238,215
Number of Sequences: 28952
Number of extensions: 100692
Number of successful extensions: 263
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -