Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0006.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7N071 Cluster: Similarities with the central region of...    37   0.23 
UniRef50_Q5HW36 Cluster: Membrane protein, putative; n=12; Campy...    33   2.9  
UniRef50_A4XN16 Cluster: Beta-lactamase domain protein; n=1; Cal...    33   2.9  
UniRef50_A3FFR1 Cluster: C1q-like protein; n=1; Dissostichus maw...    33   3.8  
UniRef50_A2FSM0 Cluster: Putative uncharacterized protein; n=1; ...    32   5.0  
UniRef50_Q7T9Z2 Cluster: Envelope protein; n=1; Adoxophyes orana...    32   6.6  
UniRef50_Q55EE1 Cluster: Putative uncharacterized protein; n=1; ...    32   6.6  
UniRef50_A3XKM5 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  
UniRef50_Q8IJU7 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  
UniRef50_O77377 Cluster: Putative uncharacterized protein MAL3P6...    31   8.8  

>UniRef50_Q7N071 Cluster: Similarities with the central region of
           DNA-directed RNA polymerase; n=1; Photorhabdus
           luminescens subsp. laumondii|Rep: Similarities with the
           central region of DNA-directed RNA polymerase -
           Photorhabdus luminescens subsp. laumondii
          Length = 831

 Score = 36.7 bits (81), Expect = 0.23
 Identities = 26/72 (36%), Positives = 38/72 (52%)
 Frame = -3

Query: 267 FEIYYLIKLIYSRNDVHLFVYL*L*NIVLPVYIMCESPIVFLI*KLFA*IRGSLVKINNI 88
           F I  +I L+ S     + +Y+    I LP+    E   + LI  L A +R +L  INNI
Sbjct: 20  FPIETVINLLSSFFSFSILIYI----ITLPLTNSLEESSIGLIIFLIAILRPALSVINNI 75

Query: 87  KDFVINKKKQYL 52
             F+INKK+ Y+
Sbjct: 76  SLFLINKKQAYI 87


>UniRef50_Q5HW36 Cluster: Membrane protein, putative; n=12;
           Campylobacter|Rep: Membrane protein, putative -
           Campylobacter jejuni (strain RM1221)
          Length = 408

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 56  YCFFLLITKSLMLFIFTNDPRIYANNFYMRKTI 154
           +C+FL++   L+ +   N  R +ANN++  K +
Sbjct: 308 FCYFLIVANQLLYYFINNPNRHFANNYHFTKEL 340


>UniRef50_A4XN16 Cluster: Beta-lactamase domain protein; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           Beta-lactamase domain protein - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 243

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 281 FFLINKCKIFMKLILKKVCVSAPTHDWSLLDIKN 382
           F+ + +C   + ++ ++ C+  P+HDW +L+ KN
Sbjct: 207 FYNLEECIKAISMVKEEKCIVLPSHDWRVLEYKN 240


>UniRef50_A3FFR1 Cluster: C1q-like protein; n=1; Dissostichus
           mawsoni|Rep: C1q-like protein - Dissostichus mawsoni
           (Antarctic cod)
          Length = 325

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 134 FYMRKTIGDSHMIYTGNTIFHNYK 205
           +Y R  I ++H  YTG  +FHNYK
Sbjct: 243 YYFRFNIWETHSAYTGVELFHNYK 266


>UniRef50_A2FSM0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 481

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 74  ITKSLMLFIFTNDPRI--YANNFYMRKTIGDSHMIYTGNTIFHNYK 205
           IT++LM + +  D  I  Y   FY  K IG +++    N IFHN++
Sbjct: 408 ITQTLMSYSYQIDLNINGYEQGFYQMKIIGINNLGKESNHIFHNFE 453


>UniRef50_Q7T9Z2 Cluster: Envelope protein; n=1; Adoxophyes orana
           granulovirus|Rep: Envelope protein - Adoxophyes orana
           granulovirus (AoGV)
          Length = 574

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 239 FIVEMMSICLSIYNYEILCCLCISCVNPLLS 147
           +IV  + +C+ IYN +  CC CI    P LS
Sbjct: 538 YIVCALIVCIIIYNVKKYCCWCIPNTKPQLS 568


>UniRef50_Q55EE1 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1214

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 354  TTGVYWI*KIKRNNTRNSSILRQHXPLQIIN 446
            TT  +WI + K + T++S IL  H P  IIN
Sbjct: 1179 TTPAHWIPQNKHSQTQHSPILASHRPTSIIN 1209


>UniRef50_A3XKM5 Cluster: Putative uncharacterized protein; n=1;
           Leeuwenhoekiella blandensis MED217|Rep: Putative
           uncharacterized protein - Leeuwenhoekiella blandensis
           MED217
          Length = 283

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 366 KLQSCVG--ADTHTFFNISFINILHLLIRKNSIK*FEIYYLIKLIYSRNDVHLFV 208
           K Q C    +D    FN S   ILHLLI     K  +IY   KLI + ND+   V
Sbjct: 123 KYQVCASIISDDDEVFNHSDAEILHLLIDSVGSKYRQIYLSQKLIENNNDLERLV 177


>UniRef50_Q8IJU7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1345

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 50  YKYCFFLLITKSLMLFIFTNDPRIYANNFYMRKTIGD--SHMIYTGNTIFHNYK*TNKWT 223
           Y   +F+ I    +L         Y NN+Y      D  + MIY+   IF N   TN WT
Sbjct: 115 YSNIYFVCINTLFLLLNNITQNNNYHNNYY-HNNYNDVINCMIYSCFDIFFNLISTNNWT 173

Query: 224 SFRL*ISLIK**ISNHLIEFFLINKCKIFMKLILK 328
              L I +       + I FF+I+   IF  ++++
Sbjct: 174 RKNLHIQIFS---KLNFIHFFIIS--NIFKAILIQ 203


>UniRef50_O77377 Cluster: Putative uncharacterized protein
           MAL3P6.17; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL3P6.17 - Plasmodium
           falciparum (isolate 3D7)
          Length = 710

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -1

Query: 296 Y*LEKTQLNDLKF-IT*LNLFIVEMMSICLSIYNY--EILC--CLCISCVNPLLSSSYKN 132
           Y +EK  L+  K  I  + L+   +  I L  Y+Y   +LC  C C+SCV PL  SS   
Sbjct: 432 YFIEKVILSFHKIKINDIVLYEYILKHIDLYFYDYPPSVLCSICSCLSCVLPLYYSSIYR 491

Query: 131 CLRKFV 114
            L+K +
Sbjct: 492 ILKKIL 497


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,586,705
Number of Sequences: 1657284
Number of extensions: 6991746
Number of successful extensions: 16152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16137
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)