Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0006.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    28   0.58 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    24   9.4  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
 Frame = +2

Query: 71  LITKSLMLFIFTNDPRIYANNFYMRKTIGDSHMIYTGNTIFHNYK*TNKWT--SFRL*IS 244
           L TKS+ L  +   P    + +Y+ +   D   ++ G  +  N +  + WT   F    +
Sbjct: 369 LYTKSIELNGYPLRPEFAESTYYLYRATKDVFYLHVGELLLSNIE-NHLWTPCGFAAVEN 427

Query: 245 LIK**ISNHLIEFFLINKCKIFMKLILKKVCVSAPTHDW 361
           L K  +SN +  FFL    K    L      +    HD+
Sbjct: 428 LEKYTLSNRMESFFLSETLKYLFLLFDDDNPIHRSHHDF 466


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 413 YRTISRIVSFNFLYPVNSSRASERTHTLFLISV 315
           Y+ ++R     F+    ++  S R+HT+F++ +
Sbjct: 670 YKMLNRAGENRFIAATKANERSSRSHTVFMLYI 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,865
Number of Sequences: 5004
Number of extensions: 34362
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)