Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0006.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    31   0.57 
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    29   1.3  
02_03_0280 - 17256524-17256733,17256838-17256958,17257318-172574...    29   1.7  
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    29   2.3  
06_03_0132 + 17024727-17025265,17025424-17025510,17025617-170256...    27   9.2  
04_04_0853 + 28745953-28747635                                         27   9.2  

>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 343 RSDARLEFTGYKKLNETIREIVLYYDN 423
           R DA + F G K + E++++ +LYYDN
Sbjct: 123 RFDAVVHFAGLKAVGESVQKPLLYYDN 149


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 343 RSDARLEFTGYKKLNETIREIVLYYDN 423
           R +A + F G K + E++++ +LYYDN
Sbjct: 82  RFEAVIHFAGLKAVGESVQKPLLYYDN 108


>02_03_0280 -
           17256524-17256733,17256838-17256958,17257318-17257445,
           17257603-17257671,17257757-17257882,17257970-17258235,
           17258341-17258535,17258614-17258694,17258729-17258851,
           17258941-17259201,17260044-17260130,17260260-17260578
          Length = 661

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 304 DIYETDIKKSVCVRSDARLEFTGYKKLNETIRE 402
           D+ E DIKK++ +  D R    GY++L E ++E
Sbjct: 535 DLAELDIKKALEIDPDNRDVKMGYRRLKEKVKE 567


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 343 RSDARLEFTGYKKLNETIREIVLYYDN 423
           R DA + F G K + E++++ +LYYD+
Sbjct: 93  RFDAVVHFAGLKAVGESVQKPLLYYDH 119


>06_03_0132 +
           17024727-17025265,17025424-17025510,17025617-17025673,
           17028754-17028992,17029161-17029279,17029395-17029481,
           17029570-17029629
          Length = 395

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 242 LFIVEMMSICLSIYNYEILCCLCISCVNPLLSSS 141
           L +   + +CL +++YEIL  L     NP L +S
Sbjct: 171 LAVPSALMVCLEMWSYEILVLLSGRLPNPKLQTS 204


>04_04_0853 + 28745953-28747635
          Length = 560

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 248 LNLFIVEMMSICLSIYNYEILCCLCISCVNP 156
           ++L +   +S+CL  + YEI+  LC   +NP
Sbjct: 308 ISLALPSCVSVCLEWWWYEIMILLCGLLLNP 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,506,871
Number of Sequences: 37544
Number of extensions: 160127
Number of successful extensions: 328
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)