Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0006.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  28   3.1  
SB_26093| Best HMM Match : Phage_integrase (HMM E-Value=0.13)          27   5.4  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_14152| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 181 ACVYHV*IPYCLPHIKIVCVNSWIIGKNK 95
           +C+Y   +  C PH+  + V  WI+GK K
Sbjct: 54  SCLYFTIVALCSPHVLGLTVLMWIVGKIK 82


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 311 MKLILKKVCVSAPTHDWSLLDIKN 382
           M  I+KK C SA + +W+L  +KN
Sbjct: 176 MWAIVKKTCNSASSREWTLQSVKN 199


>SB_26093| Best HMM Match : Phage_integrase (HMM E-Value=0.13)
          Length = 219

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 218 ICLSIYNYEILCCLCISCVN-PLLSSSYK 135
           + LS+Y Y+ L C C   VN P L  S K
Sbjct: 91  LALSLYQYKKLACTCSIAVNSPALGGSLK 119


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 102 KINNIKDFVINKKKQYL*DYIVYFK 28
           K NN +  ++ +KK  L  YI++FK
Sbjct: 505 KFNNNRSIMVERKKSLLLTYIIWFK 529


>SB_14152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 211 CLFIIMKYCVACVYHV*IPYCLPHIKIVCVNSWI 110
           CLF+++ + +AC++H      + H +I   N WI
Sbjct: 246 CLFMLLAHWLACIWH-----AIGHHEIHNTNGWI 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,944,989
Number of Sequences: 59808
Number of extensions: 214979
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)