Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0006.Seq
         (449 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY894755-1|AAX83870.1|  987|Homo sapiens proteasome activator 20...    30   4.2  
AY435145-1|AAR95646.1|  402|Homo sapiens I-branching beta-1,6-ac...    29   9.7  
AK090483-1|BAC03464.1|  402|Homo sapiens FLJ00405 protein protein.     29   9.7  
AF458024-1|AAM73864.1|  402|Homo sapiens I beta-1,6-N-acetylgluc...    29   9.7  
AB078432-1|BAC66781.1|  401|Homo sapiens beta-1,6-N-acetylglucos...    29   9.7  

>AY894755-1|AAX83870.1|  987|Homo sapiens proteasome activator 200
           kDa iii protein.
          Length = 987

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 53  KYCFFLLITKSLMLFIFTNDPRIYANNFYMRKTIGDSHMIYTGNTIFHNYK*TNKWTSFR 232
           K  FFLLI + L+  I  N      + F + K IGD  + + G+   H ++  ++W SF 
Sbjct: 8   KIMFFLLIIRKLLNHILDNSEDDTKSLFLIIKIIGDL-LQFQGS---HKHEFDSRWKSFN 63

Query: 233 L 235
           L
Sbjct: 64  L 64


>AY435145-1|AAR95646.1|  402|Homo sapiens I-branching
           beta-1,6-acetylglucosaminyltransferase family
           polypeptide 1 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  SYKYCFFLLITKSLMLFIFTNDPRIYANNFYMRKTIGDSHMI 172
           S+K+C F     S ++F+F  +  ++ N  ++R  + ++ ++
Sbjct: 4   SWKHCLFSASLISALIFVFVYNTELWENKRFLRAALSNASLL 45


>AK090483-1|BAC03464.1|  402|Homo sapiens FLJ00405 protein protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  SYKYCFFLLITKSLMLFIFTNDPRIYANNFYMRKTIGDSHMI 172
           S+K+C F     S ++F+F  +  ++ N  ++R  + ++ ++
Sbjct: 4   SWKHCLFSASLISALIFVFVYNTELWENKRFLRAALSNASLL 45


>AF458024-1|AAM73864.1|  402|Homo sapiens I
           beta-1,6-N-acetylglucosaminyltransferase A form protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  SYKYCFFLLITKSLMLFIFTNDPRIYANNFYMRKTIGDSHMI 172
           S+K+C F     S ++F+F  +  ++ N  ++R  + ++ ++
Sbjct: 4   SWKHCLFSASLISALIFVFVYNTELWENKRFLRAALSNASLL 45


>AB078432-1|BAC66781.1|  401|Homo sapiens
           beta-1,6-N-acetylglucosaminyltransferase 2 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  SYKYCFFLLITKSLMLFIFTNDPRIYANNFYMRKTIGDSHMI 172
           S+K+C F     S ++F+F  +  ++ N  ++R  + ++ ++
Sbjct: 3   SWKHCLFSASLISALIFVFVYNTELWENKRFLRAALSNASLL 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,010,335
Number of Sequences: 237096
Number of extensions: 1030382
Number of successful extensions: 1573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)