Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0006.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-7|CAB05764.2|  340|Caenorhabditis elegans Hypothetical pr...    30   0.68 
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    27   4.8  
Z70269-3|CAA94222.1|  290|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AC006723-2|AAF59428.1|  114|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z83233-7|CAB05764.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.7 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -1

Query: 431 WXVLS*YRTISRIVSFNFLYPVNSSRASERTHTLFLISVS*ISCIY*LEKTQLND----L 264
           W ++  Y  IS  + FNF+  ++SS      +TLF  ++S   C+  L K   N+    L
Sbjct: 143 WSIMMAYSRISYFLDFNFIRDLDSS----DKNTLFKYNISRAGCLA-LAKCAFNENKPKL 197

Query: 263 KFIT*LNLFIVEMMSIC 213
            F   ++ F  EM ++C
Sbjct: 198 TFPNDVDAFPSEMYNLC 214


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -3

Query: 381 FFISSKLQSCVGADTHTFFNISFINIL---HLLIRKNSIK*FE--IYYLIKLIY 235
           +FIS+    CVGA T   F     ++L   H+L      + F+  +YY+I + +
Sbjct: 99  YFISTFALGCVGASTTVLFEYRHQSVLPNFHILRHSTEYRVFKNTVYYVIAIFH 152


>Z70269-3|CAA94222.1|  290|Caenorhabditis elegans Hypothetical
           protein ZK1086.3 protein.
          Length = 290

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 405 YFSYCFV*FFISSKLQSCVGADTHTFFNISFINILHL 295
           YF +  +   +  K+ SC  +  H   N+SF NILH+
Sbjct: 254 YFLHDILKLQVRIKIISCFDSLKHVNENLSFENILHI 290


>U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical
           protein K08B5.1 protein.
          Length = 373

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 50  YKYCFFLLITKSLMLFIFTNDPRIYANNFYMRKTIGDSHM 169
           Y    +L +   L  FIFT    ++  N+Y +K IG+SH+
Sbjct: 190 YFISMWLTLLNVLAFFIFTI---LWIINYYRQKIIGNSHL 226


>AC006723-2|AAF59428.1|  114|Caenorhabditis elegans Hypothetical
           protein Y19D10B.3 protein.
          Length = 114

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 191 ILCCLCISCVNPLLSSSYKNC 129
           +LC +C  CVN  +  S KNC
Sbjct: 9   LLCAVCAFCVNLTVFFSKKNC 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,923
Number of Sequences: 27780
Number of extensions: 187446
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)