Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0006.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.50 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   4.7  
AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly pro...    21   4.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 220 PFVCLFIIMKYCVACV 173
           PF C+ I+  YC  C+
Sbjct: 287 PFFCVNIVTSYCKTCI 302


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 421 CRNIELFLVLFRLIFYIQ*TPVVRRSG 341
           C  I   + +  L+F+ + TPVVR SG
Sbjct: 524 CLGIVATMAVACLLFHHRDTPVVRASG 550


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 101 FTNDPRIYANNFYMRKTIGDSHMIYTGNTIF 193
           + N PR +    Y R+    SH+I   N  F
Sbjct: 328 YDNTPRDFPYYMYSREQYSQSHLISNENRDF 358


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 421 CRNIELFLVLFRLIFYIQ*TPVVRRSG 341
           C  I   + +  L+F+ + TPVVR SG
Sbjct: 614 CLGIVATMAVACLLFHHRDTPVVRASG 640


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 448 LLIICSGSCCRNI 410
           LL++C G  C+NI
Sbjct: 6   LLMVCLGIACQNI 18


>AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly
           protein MRJP4 protein.
          Length = 27

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 448 LLIICSGSCCRNI 410
           LL++C G  C+NI
Sbjct: 6   LLMVCLGIACQNI 18


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 230 EMMSICLSIYNYEILCCLCISCVNPLL 150
           + + +C S   +   CCLC+  +N ++
Sbjct: 341 QFLQVCRS-RRHSDSCCLCLDSMNAVI 366


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 442 IICSGSCCRNIELFLVLFRLIFYIQ 368
           ++C G     + LFL+++   F IQ
Sbjct: 217 LVCYGIWVYFVPLFLIIYSYWFIIQ 241


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 131 NFYMRKTIGDSHMIYTG 181
           N Y  +T+GD +M  +G
Sbjct: 458 NVYKVETVGDKYMAVSG 474


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 442 IICSGSCCRNIELFLVLFRLIFYIQ 368
           ++C G     + LFL+++   F IQ
Sbjct: 93  LVCYGIWVYFVPLFLIIYSYWFIIQ 117


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 131 NFYMRKTIGDSHMIYTG 181
           N Y  +T+GD +M  +G
Sbjct: 458 NVYKVETVGDKYMAVSG 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,366
Number of Sequences: 438
Number of extensions: 2228
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)