Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0004.Seq
         (399 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010284-1|AAQ23602.1| 2727|Drosophila melanogaster LP05936p pro...    30   1.3  
AE014134-1818|AAF52899.1| 2727|Drosophila melanogaster CG5604-PA...    30   1.3  

>BT010284-1|AAQ23602.1| 2727|Drosophila melanogaster LP05936p protein.
          Length = 2727

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 169  YKEYSKSCLVVLN--TDILTEMVRNIEYVFEQRHIFP 273
            Y +Y KS  ++      ILT++V+ IE  FE++H+ P
Sbjct: 893  YNKYFKSAQIIPRGAVAILTDIVKQIELSFEEQHMAP 929


>AE014134-1818|AAF52899.1| 2727|Drosophila melanogaster CG5604-PA
            protein.
          Length = 2727

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 169  YKEYSKSCLVVLN--TDILTEMVRNIEYVFEQRHIFP 273
            Y +Y KS  ++      ILT++V+ IE  FE++H+ P
Sbjct: 893  YNKYFKSAQIIPRGAVAILTDIVKQIELSFEEQHMAP 929


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,711
Number of Sequences: 53049
Number of extensions: 294429
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)