Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0004.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   5.0  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   5.0  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    27   5.0  
Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 175 EYSKSCLVVLNTDILTEMVRNIEYVFEQRHIFP 273
           EY  +C   ++TDI+TE +  + ++ E  H  P
Sbjct: 165 EYKNTCKARMHTDIVTEKI--LTFIHEHNHSAP 195


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 175 EYSKSCLVVLNTDILTEMVRNIEYVFEQRHIFP 273
           EY  +C   ++TDI+TE +  + ++ E  H  P
Sbjct: 165 EYKNTCKARMHTDIVTEKI--LTFIHEHNHSAP 195


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 37  NTITFFFFPVQNRGFLCMLIKVKQR 111
           N ITFF  PV   G  C+L K  +R
Sbjct: 21  NVITFFEIPVCTFGAYCILFKTPER 45


>Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical
           protein T03E6.3 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 187 TWSIPCSV*DFKSYLMTSNDFND 119
           TW+I C+V ++K + +T N+ N+
Sbjct: 99  TWNIHCAVFNWKQFEVTRNEVNN 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,542,691
Number of Sequences: 27780
Number of extensions: 163867
Number of successful extensions: 265
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)