Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8T7L8 Cluster: Seroin 1; n=1; Bombyx mori|Rep: Seroin ...   151   4e-36
UniRef50_Q8T7L7 Cluster: Seroin 2; n=1; Bombyx mori|Rep: Seroin ...    37   0.13 
UniRef50_Q01AX9 Cluster: Putative transcription regulator CPL1; ...    32   3.8  
UniRef50_Q6KHN6 Cluster: CTP synthetase; n=6; Mycoplasma|Rep: CT...    31   5.1  
UniRef50_UPI00006CFAD3 Cluster: hypothetical protein TTHERM_0047...    31   6.7  
UniRef50_Q9SCN7 Cluster: Disease resistance-like protein; n=3; A...    31   6.7  
UniRef50_Q8LPG4 Cluster: Receptor protein kinase-like protein; n...    31   6.7  
UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  
UniRef50_A0CBE0 Cluster: Chromosome undetermined scaffold_164, w...    31   6.7  
UniRef50_O26641 Cluster: DNA double-strand break repair protein ...    31   8.9  

>UniRef50_Q8T7L8 Cluster: Seroin 1; n=1; Bombyx mori|Rep: Seroin 1 -
           Bombyx mori (Silk moth)
          Length = 108

 Score =  151 bits (366), Expect = 4e-36
 Identities = 72/92 (78%), Positives = 76/92 (82%)
 Frame = +3

Query: 9   SIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQYTGEXXXXXXX 188
           +IASAGFVWEDDDDLFPGFSDTFKM EIPEIKSLEFDDIKTHVAGDNEQYTGE       
Sbjct: 14  TIASAGFVWEDDDDLFPGFSDTFKMREIPEIKSLEFDDIKTHVAGDNEQYTGESKSSYSS 73

Query: 189 XXTVNGKTVSSGGVSELTNDGKPSKKRSWNIK 284
             TVNGKTVSSGGVSELTNDGK  +++    K
Sbjct: 74  SSTVNGKTVSSGGVSELTNDGKAVEEKVMEYK 105


>UniRef50_Q8T7L7 Cluster: Seroin 2; n=1; Bombyx mori|Rep: Seroin 2 -
           Bombyx mori (Silk moth)
          Length = 112

 Score = 36.7 bits (81), Expect = 0.13
 Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +3

Query: 9   SIASAGFVWEDDDDLFPGF-SDTFKMPEIPEI 101
           +IASAGFVW+DD+  FPGF SD +   +IP I
Sbjct: 14  TIASAGFVWQDDN--FPGFPSDMWPSIQIPTI 43


>UniRef50_Q01AX9 Cluster: Putative transcription regulator CPL1;
           n=1; Ostreococcus tauri|Rep: Putative transcription
           regulator CPL1 - Ostreococcus tauri
          Length = 457

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 36  EDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGD 146
           ++DDD++    D  +  E+P +  L FD  +TH  GD
Sbjct: 11  DEDDDVYLSCEDELEDGELPRLVDLFFDSEETHEEGD 47


>UniRef50_Q6KHN6 Cluster: CTP synthetase; n=6; Mycoplasma|Rep: CTP
           synthetase - Mycoplasma mobile
          Length = 540

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 30  VWEDDDDLFPGFSDTFKMPEIPEIKSLEF 116
           +  DD+ +F GF+     PEI E+K+L+F
Sbjct: 476 ILSDDEFIFSGFNKKLNTPEICEVKNLDF 504


>UniRef50_UPI00006CFAD3 Cluster: hypothetical protein
           TTHERM_00470840; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00470840 - Tetrahymena
           thermophila SB210
          Length = 1135

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
 Frame = +3

Query: 42  DDDLFPGFSDT-----FKMPEIPEIK--SLEFDDIKTHVAGDNEQY 158
           D+D+FPG         FK+  I  IK  + +FDDI T +   ++QY
Sbjct: 676 DEDIFPGIKQDKSWQEFKLTNIQRIKQDNQQFDDIMTQIIRSDKQY 721


>UniRef50_Q9SCN7 Cluster: Disease resistance-like protein; n=3;
           Arabidopsis thaliana|Rep: Disease resistance-like
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 904

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 61  DFQIRSRCQRYQR*SLLNLMILKLTSREITSNIPESL 171
           +F ++ R   Y R +L  +  L L+S E++ NIPE L
Sbjct: 699 EFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEEL 735


>UniRef50_Q8LPG4 Cluster: Receptor protein kinase-like protein; n=3;
           Arabidopsis thaliana|Rep: Receptor protein kinase-like
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 864

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 103 SLLNLMILKLTSREITSNIPESLSRVT 183
           SLL L +L L+S  IT  IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150


>UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 272

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 45  DDLFPGFSDTFKMPEIPEIKSLE-FDDIKTHVAGDNEQYTGEXXXXXXXXXTVNGKTVSS 221
           DD+ P  SD  K   +PE+K+ E   + K+    D E  + +           + KT   
Sbjct: 75  DDIAPEDSDIAKPETVPEVKTEEKVPEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQ 134

Query: 222 GGVSELTNDGKPS 260
             V+E++ + KPS
Sbjct: 135 ATVAEISKEEKPS 147


>UniRef50_A0CBE0 Cluster: Chromosome undetermined scaffold_164,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_164,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 404

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 18  SAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDI-KTHVAGDNEQY 158
           S G+   + D     F +  K P IP  +S+++DD+ + + +GD E Y
Sbjct: 284 SMGYSQSNYDSKLQKFEEQSKQPTIPGSRSIKYDDLQQDYSSGDLESY 331


>UniRef50_O26641 Cluster: DNA double-strand break repair protein
           mre11; n=1; Methanothermobacter thermautotrophicus str.
           Delta H|Rep: DNA double-strand break repair protein
           mre11 - Methanobacterium thermoautotrophicum
          Length = 587

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +3

Query: 63  FSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQYTGEXXXXXXXXXTVNGKTVSSGGVSELT 242
           F+D  + PE  EI+  EF+ I+  V G N Q              V GK V      EL+
Sbjct: 411 FTDRAREPEFREIRPAEFEYIECDVTGKNSQDAYHQIGREIAGHDVTGKVVMLKIRGELS 470

Query: 243 NDGKPSKKRSWNIK 284
           + G+ S   S +I+
Sbjct: 471 S-GRTSDIDSASIR 483


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,890,669
Number of Sequences: 1657284
Number of extensions: 4879161
Number of successful extensions: 12151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12150
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)