Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   3.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   4.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   7.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   9.2  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 109 LNLMILKLTSREITSNIPESLSRVTV 186
           ++ + L+  + E T+N PE  + VTV
Sbjct: 111 ISWIFLETVANENTTNCPEQKNTVTV 136


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
          protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 42 DDDLFPGFSDT 74
          D +LFPGF  T
Sbjct: 13 DSELFPGFGST 23


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = +1

Query: 46  TICSRDFQIRSRCQRYQR*SLLNLMILKLTSREITSNIP 162
           ++ SRD  +R+   +Y    +++  +++  +  +  NIP
Sbjct: 109 SVHSRDVNVRAVVNQYYEAEVVSEYVIRGNTAVLKCNIP 147


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 249 GKPSKKRSWNIKMAIKXIQRLFTN 320
           G   KKR + I   ++ ++ LFT+
Sbjct: 107 GGEEKKREFYIPPEVENVEDLFTS 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,892
Number of Sequences: 336
Number of extensions: 1167
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)