Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0001.Seq
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0610 + 24335153-24337724,24337835-24338256 30 0.65
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 29 1.1
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 29 1.5
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 27 3.5
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041... 27 4.6
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 27 4.6
07_01_1153 - 10842259-10842390,10843348-10845315 27 6.1
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 27 6.1
07_03_1513 - 27327702-27328604,27329957-27329995,27330413-273306... 26 8.1
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431... 26 8.1
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 26 8.1
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 29.9 bits (64), Expect = 0.65
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 103 SLLNLMILKLTSREITSNIPESLSR 177
+L L+ LKLTS ++T NIP +L R
Sbjct: 481 NLRQLVYLKLTSNKLTGNIPNALDR 505
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 30 VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDD 122
+W+ DDD FP F+ IP+ S +FDD
Sbjct: 1072 IWDSDDD-FPNEEKHFRTQIIPKDLSQDFDD 1101
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 36 EDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQYTG 164
E + D P +T PE PE S++ + K + A DNE+Y G
Sbjct: 413 EVEQDQMPPVQETLHNPE-PE--SIDIEPPKENTADDNERYVG 452
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 30 VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQY 158
VW+DD L G+ + K+ I S + I+ + NE+Y
Sbjct: 245 VWQDDTILVIGWGTSVKIAAIRTDSSQGLNGIQRSITASNEKY 287
>02_04_0458 -
23102262-23102377,23102505-23102661,23103094-23104140,
23104357-23104500,23105389-23105457
Length = 510
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 166 SPVYCSLSPAT*VLISSNSRDFISGISGILNVSENPGN 53
+P +C PA+ V + S+ FIS + ILN + P +
Sbjct: 33 NPQFCHTQPASFVTVISDRTTFISIFAKILNSAIQPAS 70
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 103 SLLNLMILKLTSREITSNIPESLSRVT 183
+L +L+ L L++ EIT +IPES+ +T
Sbjct: 300 NLRSLIKLYLSTNEITGSIPESIGNLT 326
>07_01_1153 - 10842259-10842390,10843348-10845315
Length = 699
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 195 TVNGKTVSSGGVSELTN 245
T++G T++SGG+ ELTN
Sbjct: 41 TMDGATITSGGLLELTN 57
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 198 VNGKTVSSGGVSELTNDGKPSKKRSWNIKMAIKXIQR 308
V G T V T D KP+KK+ IK +K +++
Sbjct: 774 VEGNTSGEASVDHATEDKKPTKKKV--IKKVVKVVRK 808
>07_03_1513 - 27327702-27328604,27329957-27329995,27330413-27330692,
27330772-27330942,27331025-27331857,27331939-27332400,
27332479-27333212,27333301-27333430
Length = 1183
Score = 26.2 bits (55), Expect = 8.1
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = -2
Query: 173 LRLSGILLVISRDVSFNIIKF---KRL----YLWYLWHLERI*KSREQIVIV 39
+RLS I LV +RDV I+K +R+ LW W+ KS E+++ V
Sbjct: 1084 IRLSLIQLVSARDVVQTILKLEDDRRMEVFFLLWVWWYARNKVKSGEEVIRV 1135
>01_06_0445 -
29441472-29442152,29442244-29442357,29442959-29443186,
29443284-29443586
Length = 441
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 99 SLVSLAS*TYLKIPGTNRHRPPIQSQRS 16
S +SL ++ G H+PP+Q QRS
Sbjct: 357 SYMSLTKSAKARLSGYGSHKPPLQRQRS 384
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 103 SLLNLMILKLTSREITSNIPESL 171
SLL L L L+S ++T NIP S+
Sbjct: 132 SLLMLSSLNLSSNQLTGNIPPSI 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,334,900
Number of Sequences: 37544
Number of extensions: 134087
Number of successful extensions: 408
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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