Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    28   0.097
AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    23   4.8  
CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    22   6.4  
AY146716-1|AAO12076.1|  159|Anopheles gambiae odorant-binding pr...    22   6.4  

>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 28.3 bits (60), Expect = 0.097
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 204 GKTVSSGGVSELTNDGKPSKKRS 272
           GK  SSGG S  T+ G PS+ +S
Sbjct: 630 GKLSSSGGASSTTHSGAPSRSQS 652


>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 151 SLSPAT*VLISSNSRDFISGISGILNVSENPGNK 50
           +LSP T  L +++     SG S   NVS   GN+
Sbjct: 36  ALSPTTTTLATTSGTAASSGASNSSNVSVAIGNR 69


>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 159 YIARYLPRREF*YHQIQETLSL 94
           Y+ R +PRR    H + + LSL
Sbjct: 209 YLVRIVPRRNLFDHLLPDNLSL 230


>AY146716-1|AAO12076.1|  159|Anopheles gambiae odorant-binding
           protein AgamOBP12 protein.
          Length = 159

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 28  LYGRTMTICSRDFQIRSRCQ 87
           L GRT+  C + + I ++CQ
Sbjct: 122 LRGRTLNNCEKAYLILNQCQ 141


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,970
Number of Sequences: 2352
Number of extensions: 6069
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 27944475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)