Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC042197-1|AAH42197.1|  465|Homo sapiens major facilitator super...    29   3.5  
AK024215-1|BAB14852.1|  465|Homo sapiens protein ( Homo sapiens ...    29   3.5  
AB014732-1|BAB20269.1|  466|Homo sapiens SMAP-4 protein.               29   3.5  
AK096678-1|BAC04838.1|  738|Homo sapiens protein ( Homo sapiens ...    28   8.2  
AB002340-1|BAA20800.3| 2467|Homo sapiens KIAA0342 protein protein.     28   8.2  

>BC042197-1|AAH42197.1|  465|Homo sapiens major facilitator
           superfamily domain containing 1 protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 146 ISRDVSFNIIKFKRLYLWYLW 84
           + RD+  N  KF  LY WY W
Sbjct: 70  VKRDMQVNTTKFMLLYAWYSW 90


>AK024215-1|BAB14852.1|  465|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14153 fis, clone NT2RM1000092, weakly similar to
           MULTIDRUG RESISTANCE PROTEIN 2. ).
          Length = 465

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 146 ISRDVSFNIIKFKRLYLWYLW 84
           + RD+  N  KF  LY WY W
Sbjct: 70  VKRDMQVNTTKFMLLYAWYSW 90


>AB014732-1|BAB20269.1|  466|Homo sapiens SMAP-4 protein.
          Length = 466

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 146 ISRDVSFNIIKFKRLYLWYLW 84
           + RD+  N  KF  LY WY W
Sbjct: 70  VKRDMQVNTTKFMLLYAWYSW 90


>AK096678-1|BAC04838.1|  738|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39359 fis, clone PEBLM2004290. ).
          Length = 738

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 242 CQLANSAAAHCLAVDRG*GTVTRLRLSGI 156
           C+LA+S  A C A +RG   V R +L GI
Sbjct: 118 CKLADSIKAICNAYNRGLSCVLRKKLKGI 146


>AB002340-1|BAA20800.3| 2467|Homo sapiens KIAA0342 protein protein.
          Length = 2467

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 242 CQLANSAAAHCLAVDRG*GTVTRLRLSGI 156
           C+LA+S  A C A +RG   V R +L GI
Sbjct: 447 CKLADSIKAICNAYNRGLSCVLRKKLKGI 475


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,873,505
Number of Sequences: 237096
Number of extensions: 695621
Number of successful extensions: 4987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4987
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)