Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U61288-1|AAB17543.1|  790|Caenorhabditis elegans CE protein.           26   9.7  

>AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical
           protein T17A3.7 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 119 IKFKRLYLWYLWHLERI*KSREQIVI 42
           +KF+RL++W   HL+R+    E +++
Sbjct: 153 LKFRRLHIWANCHLQRVPMKLEDLLV 178


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
            R08B4.1b protein.
          Length = 1160

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 31   YGRTMTICSRDFQIRSRC 84
            YG+T+ I SR F  R++C
Sbjct: 1014 YGKTLRITSRHFMYRNKC 1031


>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical protein
            R08B4.1a protein.
          Length = 1137

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 31   YGRTMTICSRDFQIRSRC 84
            YG+T+ I SR F  R++C
Sbjct: 991  YGKTLRITSRHFMYRNKC 1008


>U61288-1|AAB17543.1|  790|Caenorhabditis elegans CE protein.
          Length = 790

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  YGRTMTICSRDFQIRSRC 84
           YG+T+ I SR F  R++C
Sbjct: 644 YGKTLRITSRHFMYRNKC 661


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,017,465
Number of Sequences: 27780
Number of extensions: 114451
Number of successful extensions: 293
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)