Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.28 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.50 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.87 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.87 

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 84  PEIP-EIKSLEFDDIKTHVA-GDNEQYTGE 167
           PEI  E++ +E+DDIKT ++ G N+    E
Sbjct: 290 PEIKKEVEDMEYDDIKTELSTGMNDDIPPE 319



 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 265 KGHGI*RWPLNXSSDYSRIKXFKSKILFHK 354
           KG+G+  W        SR+    +K L HK
Sbjct: 478 KGNGVYAWIGAGRDSDSRLLDLCTKFLMHK 507


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 151 SNIPESLSRVTVPHPRSTXXXXXXXXXXXXQMTENRRRK---GHGI*RWP 291
           SN+P+S++ + V   RS              ++ N +     GHG+ +WP
Sbjct: 237 SNVPKSVAGLNVSSRRSDMNGTTPLDEKPLDVSSNDKVHPLYGHGVCKWP 286


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 9    SIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIK 128
            S+A   FV  +  ++ PG  D    PE+ E +  + D +K
Sbjct: 1857 SVAETTFVGGNQGNVVPGNGDRSDRPELSEAE-CDIDSLK 1895


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 9    SIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIK 128
            S+A   FV  +  ++ PG  D    PE+ E +  + D +K
Sbjct: 1853 SVAETTFVGGNQGNVVPGNGDRSDRPELSEAE-CDIDSLK 1891


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,609
Number of Sequences: 438
Number of extensions: 1355
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)