Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote...    31   0.24 
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    31   0.24 
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont...    31   0.24 
At3g05360.1 68416.m00584 disease resistance family protein / LRR...    28   2.2  
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont...    28   2.2  
At1g66970.1 68414.m07615 glycerophosphoryl diester phosphodieste...    28   2.2  
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    27   3.9  
At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-relate...    27   5.2  
At5g45780.1 68418.m05630 leucine-rich repeat transmembrane prote...    26   9.0  
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    26   9.0  

>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 694

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 103 SLLNLMILKLTSREITSNIPESLSRVT 183
           SLL L +L L+S  IT  IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 103 SLLNLMILKLTSREITSNIPESLSRVT 183
           SLL L +L L+S  IT  IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150


>At3g53240.1 68416.m05868 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 891

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 61  DFQIRSRCQRYQR*SLLNLMILKLTSREITSNIPESL 171
           +F ++ R   Y R +L  +  L L+S E++ NIPE L
Sbjct: 686 EFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEEL 722


>At3g05360.1 68416.m00584 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to
           elicitor-inducible LRR receptor-like protein EILP
           [Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
           Cf-2.2 [Lycopersicon pimpinellifolium]
           gi|1184077|gb|AAC15780
          Length = 786

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 106 LLNLMILKLTSREITSNIPESLSRVT 183
           L  L +L L+    TSNIP+SL+ +T
Sbjct: 621 LKELRLLNLSGNSFTSNIPQSLANLT 646


>At1g80080.1 68414.m09374 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 496

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 106 LLNLMILKLTSREITSNIPESLSRV 180
           L NLMIL L++  I  +IP+SL+R+
Sbjct: 326 LKNLMILVLSNTNIQGSIPKSLTRL 350


>At1g66970.1 68414.m07615 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family
          Length = 763

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 234 ELTNDGKPSKKRSWNIKMAIKXIQRLFTNKXI*VXNIISQKGI 362
           ++++DG P   RS +++ +I  +Q  F+N+   V  I S  GI
Sbjct: 402 QMSSDGVPFCLRSIDLRNSIAALQNTFSNRSTSVPEISSVPGI 444


>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 106 LLNLMILKLTSREITSNIPESL 171
           LLNL  L+L S  IT  IPE L
Sbjct: 98  LLNLQYLELYSNNITGEIPEEL 119


>At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-related
           similar to cyclopropane synthase [Sterculia foetida]
           GI:21069167
          Length = 305

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 106 LLNLMILKLTSREITSNIPESLSRVT 183
           LLNL+++ + S+E+ SN+ E   R T
Sbjct: 98  LLNLIMILIASKELNSNLAEKRGRWT 123


>At5g45780.1 68418.m05630 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 614

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 122 IIKFKRLYLWYLWHLERI*KSREQ 51
           II    L+ W LWH  R+ +S  Q
Sbjct: 252 IISLMFLFFWVLWHRSRLSRSHVQ 275


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 63  FSDTFKMPEIPEIKSL-EFDDIKT 131
           F + FK PEIPEI  + ++DD  T
Sbjct: 250 FFNFFKPPEIPEIDEVDDYDDFDT 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,738,461
Number of Sequences: 28952
Number of extensions: 110494
Number of successful extensions: 312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)